PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43451-43500 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 74.4681 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.3077 | 92.3077 | 92.3077 | 48.0000 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8621 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.1292 | 12 | 1 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.3077 | 92.3077 | 92.3077 | 66.6667 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.0986 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.0986 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4015 | 12 | 0 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 82.3529 | 12 | 0 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | segdup | homalt | 60.0000 | 63.1579 | 57.1429 | 87.7907 | 12 | 7 | 12 | 9 | 5 | 55.5556 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 44.4444 | 51.2821 | 43.8849 | 12 | 15 | 40 | 38 | 35 | 92.1053 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | * | 63.6735 | 54.5455 | 76.4706 | 51.4286 | 12 | 10 | 13 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | * | map_l100_m1_e0 | hetalt | 0.0000 | 29.2683 | 0.0000 | 0.0000 | 12 | 29 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 75.0000 | 78.9474 | 96.1538 | 12 | 4 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 29.2683 | 0.0000 | 0.0000 | 12 | 29 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4222 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.1074 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8586 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.0000 | 12 | 2 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.7295 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 70.0000 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.6667 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.3333 | 92.3077 | 37.5000 | 79.6178 | 12 | 1 | 12 | 20 | 1 | 5.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4118 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 79.6610 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 44.0000 | 12 | 0 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.9298 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6759 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 92.6554 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.2569 | 12 | 1 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8994 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m0_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.5899 | 12 | 3 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.5479 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||