PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43101-43150 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 61.1111 | 44.0000 | 100.0000 | 45.4545 | 11 | 14 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 57.7428 | 42.3077 | 90.9091 | 78.4314 | 11 | 15 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 57.8947 | 42.3077 | 91.6667 | 78.1818 | 11 | 15 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 52.3810 | 36.6667 | 91.6667 | 78.9474 | 11 | 19 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | * | 59.4595 | 73.3333 | 50.0000 | 93.6047 | 11 | 4 | 11 | 11 | 2 | 18.1818 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | homalt | 84.6154 | 91.6667 | 78.5714 | 97.0276 | 11 | 1 | 11 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 81.4815 | 84.6154 | 78.5714 | 67.4419 | 11 | 2 | 11 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 89.9225 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 91.4474 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | * | 78.5714 | 73.3333 | 84.6154 | 91.5584 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 87.3563 | 11 | 1 | 11 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5714 | 68.7500 | 91.6667 | 97.1223 | 11 | 5 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 96.3333 | 11 | 6 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 67.1186 | 91.6667 | 52.9412 | 99.4967 | 11 | 1 | 9 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 84.6154 | 73.3333 | 100.0000 | 94.6602 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 85.8824 | 11 | 4 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 81.4815 | 68.7500 | 100.0000 | 86.9565 | 11 | 5 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 81.4815 | 68.7500 | 100.0000 | 87.2340 | 11 | 5 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 89.5652 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9899 | 11 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.2973 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 96.0145 | 11 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 11 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.6667 | 84.6154 | 100.0000 | 71.1111 | 11 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | * | 84.6154 | 73.3333 | 100.0000 | 91.9708 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 90.9836 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 91.8519 | 11 | 4 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 74.1573 | 73.3333 | 75.0000 | 82.9787 | 11 | 4 | 24 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 75.1899 | 73.3333 | 77.1429 | 83.7209 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 75.1899 | 73.3333 | 77.1429 | 84.1629 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | * | 85.6287 | 84.6154 | 86.6667 | 46.4286 | 11 | 2 | 13 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.2450 | 11 | 1 | 11 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.2652 | 11 | 0 | 11 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.3636 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 53.6585 | 68.7500 | 44.0000 | 90.2724 | 11 | 5 | 11 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | homalt | 69.1824 | 91.6667 | 55.5556 | 94.1935 | 11 | 1 | 10 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | homalt | 91.6667 | 91.6667 | 91.6667 | 58.6207 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 35.4839 | 31.4286 | 40.7407 | 83.1250 | 11 | 24 | 11 | 16 | 15 | 93.7500 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.5144 | 0.0000 | 0.0000 | 11 | 302 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 48.0000 | 11 | 1 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9141 | 11 | 0 | 11 | 0 | 0 | ||