PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42901-42950 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 10.6916 | 5.9524 | 52.4590 | 42.9907 | 10 | 158 | 32 | 29 | 10 | 34.4828 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 5.7143 | 0.0000 | 0.0000 | 10 | 165 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.8837 | 10 | 1 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9166 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.7480 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5157 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 45.8333 | 11 | 1 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3366 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 40.0000 | 11 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.9836 | 11 | 1 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8695 | 11 | 0 | 11 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | func_cds | het | 56.0784 | 45.8333 | 72.2222 | 40.0000 | 11 | 13 | 13 | 5 | 3 | 60.0000 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 36.6667 | 0.0000 | 0.0000 | 11 | 19 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 35.4839 | 0.0000 | 0.0000 | 11 | 20 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4167 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8741 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 91.6667 | 84.6154 | 100.0000 | 62.0690 | 11 | 2 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 81.7337 | 73.3333 | 92.3077 | 96.1310 | 11 | 4 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 53.6585 | 36.6667 | 100.0000 | 89.6226 | 11 | 19 | 11 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.4951 | 11 | 9 | 8 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.7059 | 73.3333 | 57.8947 | 97.5734 | 11 | 4 | 11 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | * | 52.3810 | 39.2857 | 78.5714 | 92.5532 | 11 | 17 | 11 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | homalt | 83.6502 | 91.6667 | 76.9231 | 91.8750 | 11 | 1 | 10 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 11 | 22 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | het | 77.7385 | 78.5714 | 76.9231 | 96.9697 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 11.7647 | 6.8750 | 40.7407 | 67.2727 | 11 | 149 | 22 | 32 | 14 | 43.7500 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3105 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 96.4088 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 72.5000 | 11 | 2 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2000 | 11 | 1 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 45.8333 | 11 | 1 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8129 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8605 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | * | 81.4815 | 73.3333 | 91.6667 | 92.2581 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.0000 | 78.5714 | 100.0000 | 86.4198 | 11 | 3 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 73.6842 | 11 | 20 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.6667 | 84.6154 | 100.0000 | 65.6250 | 11 | 2 | 33 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.9394 | 11 | 3 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 94.8936 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | het | 96.0000 | 100.0000 | 92.3077 | 94.6281 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |