PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42501-42550 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5045 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.0575 | 10 | 1 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9440 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 73.6842 | 10 | 2 | 15 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.9286 | 10 | 16 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.3333 | 10 | 16 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | het | 29.5567 | 19.6078 | 60.0000 | 94.2085 | 10 | 41 | 9 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.7273 | 66.6667 | 80.0000 | 95.9514 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.7273 | 66.6667 | 80.0000 | 96.0630 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 67.0732 | 55.5556 | 84.6154 | 78.3333 | 10 | 8 | 11 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 67.6923 | 66.6667 | 68.7500 | 71.4286 | 10 | 5 | 11 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1169 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9648 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6891 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6987 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | hetalt | 51.2821 | 34.4828 | 100.0000 | 93.5065 | 10 | 19 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9020 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 83.3333 | 76.9231 | 99.2709 | 10 | 2 | 10 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | hetalt | 58.8235 | 43.4783 | 90.9091 | 92.9487 | 10 | 13 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | het | 52.5060 | 52.6316 | 52.3810 | 94.1176 | 10 | 9 | 11 | 10 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | het | 68.9655 | 71.4286 | 66.6667 | 90.5660 | 10 | 4 | 10 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9565 | 76.9231 | 100.0000 | 69.6970 | 10 | 3 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | hetalt | 74.3243 | 62.5000 | 91.6667 | 84.0000 | 10 | 6 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2825 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | INDEL | * | decoy | * | 66.6667 | 100.0000 | 50.0000 | 99.9491 | 10 | 0 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.6674 | 10 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5611 | 76.9231 | 89.0909 | 67.2619 | 10 | 3 | 49 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 82.2785 | 83.3333 | 81.2500 | 90.4762 | 10 | 2 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 68.2927 | 66.6667 | 70.0000 | 89.5105 | 10 | 5 | 21 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 66.6667 | 66.6667 | 66.6667 | 89.5899 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 66.6667 | 66.6667 | 66.6667 | 89.6875 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 84.0909 | 10 | 6 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 71.7949 | 66.6667 | 77.7778 | 99.3080 | 10 | 5 | 14 | 4 | 3 | 75.0000 | |
| qzeng-custom | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m0_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 89.8990 | 10 | 4 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9200 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2816 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 94.2197 | 10 | 1 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.3970 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |