PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41901-41950 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.4878 | 8 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.0860 | 8 | 0 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7928 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.0177 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2456 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.2264 | 8 | 1 | 8 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.4828 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.0000 | 8 | 6 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 88.8889 | 80.0000 | 100.0000 | 99.5595 | 8 | 2 | 8 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 69.5652 | 57.1429 | 88.8889 | 73.5294 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | homalt | 16.8421 | 100.0000 | 9.1954 | 61.3333 | 8 | 0 | 8 | 79 | 79 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 8 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 47.0588 | 8 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.4891 | 88.8889 | 98.5915 | 57.4850 | 8 | 1 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.2857 | 8 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | SNP | ti | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 80.0000 | 100.0000 | 97.8723 | 8 | 2 | 8 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 91.2281 | 8 | 1 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 72.7273 | 66.6667 | 80.0000 | 99.6003 | 8 | 4 | 8 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 80.0000 | 80.0000 | 99.5795 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 61.5385 | 47.0588 | 88.8889 | 95.9641 | 8 | 9 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4426 | 8 | 8 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.2593 | 44.4444 | 88.8889 | 96.0352 | 8 | 10 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5484 | 8 | 8 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 11.5942 | 0.0000 | 0.0000 | 8 | 61 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 10.8108 | 0.0000 | 0.0000 | 8 | 66 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 9.5238 | 0.0000 | 0.0000 | 8 | 76 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | homalt | 88.8889 | 88.8889 | 88.8889 | 50.0000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | * | 0.6022 | 0.3733 | 1.5564 | 60.4311 | 8 | 2135 | 8 | 506 | 462 | 91.3043 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 25.8065 | 15.0943 | 88.8889 | 83.3333 | 8 | 45 | 8 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 74.6032 | 8 | 8 | 8 | 8 | 8 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 22.8571 | 36.3636 | 16.6667 | 72.8814 | 8 | 14 | 8 | 40 | 35 | 87.5000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 8 | 104 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | func_cds | homalt | 61.5385 | 53.3333 | 72.7273 | 21.4286 | 8 | 7 | 8 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 25.0000 | 15.0943 | 72.7273 | 94.2105 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |