PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41601-41650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 59.2593 | 53.3333 | 66.6667 | 95.5720 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | * | 64.0000 | 61.5385 | 66.6667 | 55.5556 | 8 | 5 | 8 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.3684 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.0396 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.2093 | 50.0000 | 29.6296 | 98.7677 | 8 | 8 | 8 | 19 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.1478 | 0.0000 | 0.0000 | 8 | 689 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 15.2381 | 9.1954 | 44.4444 | 84.6154 | 8 | 79 | 8 | 10 | 7 | 70.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | * | 9.6970 | 5.5944 | 36.3636 | 92.6174 | 8 | 135 | 8 | 14 | 6 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.2593 | 72.7273 | 50.0000 | 99.8444 | 8 | 3 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 61.5385 | 80.0000 | 50.0000 | 99.8383 | 8 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.2460 | 22.8571 | 87.5000 | 74.1935 | 8 | 27 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 2.9851 | 80.0000 | 1.5209 | 74.7722 | 8 | 2 | 8 | 518 | 2 | 0.3861 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.3390 | 100.0000 | 11.3208 | 89.1393 | 8 | 0 | 6 | 47 | 1 | 2.1277 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | func_cds | het | 39.0244 | 27.5862 | 66.6667 | 64.7059 | 8 | 21 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 34.0426 | 21.6216 | 80.0000 | 86.6667 | 8 | 29 | 8 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4954 | 8 | 16 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | homalt | 4.7937 | 25.8065 | 2.6423 | 56.0714 | 8 | 23 | 13 | 479 | 433 | 90.3967 | |
| gduggal-snapplat | INDEL | I6_15 | func_cds | * | 29.0909 | 18.6047 | 66.6667 | 47.8261 | 8 | 35 | 8 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.4575 | 6.5574 | 25.8065 | 80.9816 | 8 | 114 | 8 | 23 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | hetalt | 19.7183 | 11.1111 | 87.5000 | 93.7008 | 8 | 64 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 26.6667 | 47.0588 | 18.6047 | 97.2132 | 8 | 9 | 8 | 35 | 1 | 2.8571 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 3.4335 | 0.0000 | 0.0000 | 8 | 225 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | het | 94.1176 | 100.0000 | 88.8889 | 77.5000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 69.5652 | 53.3333 | 100.0000 | 98.5841 | 8 | 7 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 72.7273 | 88.8889 | 99.5759 | 8 | 3 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.5358 | 0.0000 | 0.0000 | 8 | 1485 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | het | 76.1905 | 100.0000 | 61.5385 | 51.8519 | 8 | 0 | 8 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.4848 | 33.3333 | 88.8889 | 88.3117 | 8 | 16 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | * | 61.5385 | 44.4444 | 100.0000 | 99.0730 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | * | 64.0000 | 47.0588 | 100.0000 | 72.4138 | 8 | 9 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 61.5385 | 44.4444 | 100.0000 | 77.1429 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | homalt | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 98.2906 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | * | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 29.6296 | 88.8889 | 99.4278 | 8 | 19 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | * | 69.5652 | 66.6667 | 72.7273 | 47.6190 | 8 | 4 | 8 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 8.5511 | 4.6512 | 52.9412 | 66.0000 | 8 | 164 | 9 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 55.1724 | 50.0000 | 61.5385 | 90.5109 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 87.5000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||