PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41551-41600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.9048 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.5882 | 8 | 6 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.5278 | 8 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | * | het | 89.8401 | 88.8889 | 90.8120 | 96.3931 | 8 | 1 | 425 | 43 | 1 | 2.3256 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.2105 | 72.7273 | 100.0000 | 89.3333 | 8 | 3 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8620 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 88.8889 | 88.8889 | 88.8889 | 99.4678 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 42.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 65.3846 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | het | 66.6667 | 100.0000 | 50.0000 | 55.5556 | 8 | 0 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 13.1148 | 0.0000 | 0.0000 | 8 | 53 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 15.3846 | 0.0000 | 0.0000 | 8 | 44 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 7.2838 | 3.7915 | 92.3077 | 60.6061 | 8 | 203 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 8.1356 | 4.2553 | 92.3077 | 59.3750 | 8 | 180 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 26.6325 | 16.3265 | 72.2222 | 65.3846 | 8 | 41 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 28.0124 | 22.8571 | 36.1702 | 73.8889 | 8 | 27 | 17 | 30 | 17 | 56.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | het | 72.5537 | 88.8889 | 61.2903 | 85.7798 | 8 | 1 | 38 | 24 | 16 | 66.6667 | |
| gduggal-snapfb | INDEL | C1_5 | * | het | 41.5584 | 88.8889 | 27.1186 | 82.3353 | 8 | 1 | 16 | 43 | 3 | 6.9767 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 52.9412 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | het | 69.5652 | 57.1429 | 88.8889 | 93.8356 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | het | 69.5652 | 57.1429 | 88.8889 | 93.9189 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 71.6418 | 88.8889 | 60.0000 | 93.5484 | 8 | 1 | 6 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 95.9391 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 96.5217 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 98.8473 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | het | 61.5385 | 100.0000 | 44.4444 | 48.5714 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | het | 88.8889 | 88.8889 | 88.8889 | 59.0909 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 59.2593 | 53.3333 | 66.6667 | 87.5000 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 76.1905 | 88.8889 | 66.6667 | 85.8824 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 59.2593 | 53.3333 | 66.6667 | 88.9908 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 76.1905 | 88.8889 | 66.6667 | 87.5000 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 59.2593 | 53.3333 | 66.6667 | 89.0909 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | het | 76.1905 | 88.8889 | 66.6667 | 87.6289 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.8919 | 0.0000 | 0.0000 | 8 | 889 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.8127 | 8 | 1 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 57.6923 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3151 | 0.0000 | 0.0000 | 8 | 2531 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3653 | 0.0000 | 0.0000 | 8 | 2182 | 0 | 0 | 0 | ||