PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41301-41350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.5224 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 94.0000 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6742 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5830 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 75.0000 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2381 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 93.4307 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6460 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5597 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3881 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.5185 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | tech_badpromoters | het | 82.3529 | 70.0000 | 100.0000 | 58.8235 | 7 | 3 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 78.9474 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 96.3563 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 95.3125 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.7544 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.6692 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.4074 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.0678 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 100.0000 | 7 | 2 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.9091 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 95.3642 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5352 | 7 | 0 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 82.3529 | 100.0000 | 70.0000 | 97.4937 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1338 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1624 | 7 | 2 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8525 | 7 | 0 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.4359 | 7 | 1 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9130 | 7 | 0 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 90.6977 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 91.4894 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 82.3529 | 77.7778 | 87.5000 | 91.7526 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 100.0000 | 7 | 2 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.5246 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.4110 | 7 | 1 | 7 | 0 | 0 | ||