PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41201-41250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.5522 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.1389 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7831 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l250_m2_e0 | * | 93.3333 | 87.5000 | 100.0000 | 97.8528 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.9412 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.6970 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 70.0000 | 87.5000 | 98.5102 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.6316 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 93.3333 | 87.5000 | 100.0000 | 96.9432 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 91.4894 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 96.4467 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 97.1074 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l125_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 97.1074 | 7 | 23 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.0684 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.1373 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1818 | 7 | 2 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8411 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3282 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 61.1111 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.7692 | 87.5000 | 75.0000 | 75.0000 | 7 | 1 | 6 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.0000 | 53.8462 | 100.0000 | 41.6667 | 7 | 6 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 41.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | het | 37.8378 | 24.1379 | 87.5000 | 96.7347 | 7 | 22 | 7 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | func_cds | het | 87.5000 | 77.7778 | 100.0000 | 46.1538 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.8905 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 98.0723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5758 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8854 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0704 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m0_e0 | * | 93.3333 | 87.5000 | 100.0000 | 97.7987 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.3158 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||