PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40601-40650 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.0833 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.2264 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.7213 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 98.4091 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 98.4783 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.4051 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9477 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | * | 55.8904 | 85.7143 | 41.4634 | 75.3012 | 6 | 1 | 17 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | het | 65.9341 | 85.7143 | 53.5714 | 70.5263 | 6 | 1 | 15 | 13 | 3 | 23.0769 | |
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | C6_15 | * | het | 75.0000 | 85.7143 | 66.6667 | 94.0945 | 6 | 1 | 10 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.3077 | 6 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 6 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.3333 | 6 | 3 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | het | 66.6667 | 54.5455 | 85.7143 | 94.4444 | 6 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 16.2162 | 8.8235 | 100.0000 | 96.6480 | 6 | 62 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 16.2162 | 8.8235 | 100.0000 | 96.8750 | 6 | 62 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 15.1899 | 8.2192 | 100.0000 | 96.9388 | 6 | 67 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0617 | 6 | 6 | 4 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 99.7487 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 99.7537 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 49.5868 | 35.2941 | 83.3333 | 98.9455 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.9286 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | homalt | 60.0000 | 46.1538 | 85.7143 | 75.8621 | 6 | 7 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 24.4898 | 16.6667 | 46.1538 | 69.0476 | 6 | 30 | 6 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 87.3016 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.0000 | 35.2941 | 26.0870 | 98.9890 | 6 | 11 | 6 | 17 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 66.6667 | 85.7143 | 98.7973 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 1.3072 | 0.6579 | 100.0000 | 86.2745 | 6 | 906 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.9562 | 0.4804 | 100.0000 | 89.2308 | 6 | 1243 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.9562 | 0.4804 | 100.0000 | 89.2308 | 6 | 1243 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.7653 | 0.0000 | 0.0000 | 6 | 778 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 17.6471 | 11.5385 | 37.5000 | 85.1852 | 6 | 46 | 6 | 10 | 7 | 70.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 1.8576 | 0.9740 | 20.0000 | 60.0000 | 6 | 610 | 6 | 24 | 17 | 70.8333 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 89.0909 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 68.7500 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 72.2222 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 77.4194 | 75.0000 | 80.0000 | 72.2222 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.6903 | 6 | 2 | 6 | 0 | 0 | ||