PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40551-40600 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 6 | 78 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | het | 50.0000 | 75.0000 | 37.5000 | 55.5556 | 6 | 2 | 6 | 10 | 7 | 70.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | homalt | 57.1429 | 46.1538 | 75.0000 | 42.8571 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.1034 | 85.7143 | 20.5128 | 82.6667 | 6 | 1 | 8 | 31 | 1 | 3.2258 | |
| ciseli-custom | SNP | * | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.5532 | 100.0000 | 27.0270 | 90.7500 | 6 | 0 | 10 | 27 | 1 | 3.7037 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5556 | 100.0000 | 38.4615 | 92.6554 | 6 | 0 | 5 | 8 | 2 | 25.0000 | |
| ciseli-custom | SNP | tv | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9776 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | HG002complexvar | * | 75.0000 | 85.7143 | 66.6667 | 74.4681 | 6 | 1 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.6161 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.6825 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.6027 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.6898 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 97.1591 | 6 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 6 | 0 | 6 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 4.8387 | 0.0000 | 0.0000 | 6 | 118 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 4.8000 | 0.0000 | 0.0000 | 6 | 119 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 4.5455 | 0.0000 | 0.0000 | 6 | 126 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 91.0714 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4959 | 6 | 3 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8705 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.4072 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 93.7500 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.5414 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.1749 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.1749 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m0_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 91.4634 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l250_m1_e0 | * | 92.3077 | 85.7143 | 100.0000 | 97.9310 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2584 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9767 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.5807 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8102 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 98.3452 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3190 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |