PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40501-40550 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4895 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7612 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 60.0000 | 66.6667 | 54.5455 | 98.9413 | 6 | 3 | 6 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.9487 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4198 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2973 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 70.5882 | 66.6667 | 75.0000 | 96.9582 | 6 | 3 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 98.6079 | 6 | 2 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 98.6607 | 6 | 2 | 6 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5909 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2584 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9259 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | HG002complexvar | * | 91.1355 | 85.7143 | 97.2887 | 77.3646 | 6 | 1 | 2440 | 68 | 25 | 36.7647 | |
| cchapple-custom | INDEL | C1_5 | HG002complexvar | het | 90.6065 | 85.7143 | 96.0910 | 77.9776 | 6 | 1 | 1647 | 67 | 24 | 35.8209 | |
| cchapple-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 29.7030 | 75.0000 | 18.5185 | 49.0566 | 6 | 2 | 5 | 22 | 22 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.0895 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.6066 | 75.0000 | 94.4444 | 59.5506 | 6 | 2 | 34 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 6 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.5278 | 6 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.2112 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 96.8254 | 6 | 0 | 7 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.0980 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.6710 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 95.7265 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 1.0601 | 75.0000 | 0.5338 | 31.6717 | 6 | 2 | 6 | 1118 | 1065 | 95.2594 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 46.4088 | 31.5789 | 87.5000 | 93.2773 | 6 | 13 | 7 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 63.1579 | 50.0000 | 85.7143 | 95.7055 | 6 | 6 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | het | 60.0000 | 75.0000 | 50.0000 | 33.3333 | 6 | 2 | 6 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 70.5882 | 85.7143 | 60.0000 | 94.7368 | 6 | 1 | 6 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 12.2449 | 0.0000 | 0.0000 | 6 | 43 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | het | 70.5882 | 60.0000 | 85.7143 | 58.8235 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 8.3916 | 12.7660 | 6.2500 | 77.0883 | 6 | 41 | 6 | 90 | 75 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 21.4286 | 24.0000 | 19.3548 | 89.1228 | 6 | 19 | 6 | 25 | 21 | 84.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.4488 | 5.6604 | 28.5714 | 87.7907 | 6 | 100 | 6 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 25.0000 | 16.2162 | 54.5455 | 77.0833 | 6 | 31 | 6 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | * | 11.6505 | 6.9767 | 35.2941 | 93.5115 | 6 | 80 | 6 | 11 | 4 | 36.3636 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | * | 21.9321 | 12.7660 | 77.7778 | 96.3415 | 6 | 41 | 7 | 2 | 0 | 0.0000 | |