PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40201-40250 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.2718 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.3077 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0297 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3799 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8100 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.1595 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.1957 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.6667 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.6825 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.0833 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.0526 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.5318 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.7987 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.8979 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5318 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.5000 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9628 | 6 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 93.0000 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.7925 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.1787 | 6 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 6 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 45.4545 | 6 | 6 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.6809 | 30.0000 | 87.5000 | 57.8947 | 6 | 14 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 52.1739 | 40.0000 | 75.0000 | 63.6364 | 6 | 9 | 9 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | * | 35.9447 | 23.0769 | 81.2500 | 72.8814 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | * | 35.9447 | 23.0769 | 81.2500 | 73.3333 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | het | 74.7253 | 66.6667 | 85.0000 | 84.1270 | 6 | 3 | 17 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | * | 92.3077 | 85.7143 | 100.0000 | 93.2584 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | het | 92.3077 | 85.7143 | 100.0000 | 87.7551 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | segdup | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 99.6219 | 6 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 85.7143 | 100.0000 | 75.0000 | 99.8385 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | homalt | 92.3077 | 100.0000 | 85.7143 | 53.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 64.5161 | 6 | 9 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | * | 37.5000 | 23.0769 | 100.0000 | 84.2105 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | * | 37.5000 | 23.0769 | 100.0000 | 86.3636 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | * | 37.5000 | 23.0769 | 100.0000 | 86.6667 | 6 | 20 | 6 | 0 | 0 | ||