PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40151-40200 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.1763 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0265 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1290 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.4026 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.0265 | 6 | 1 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.4912 | 6 | 1 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.8593 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9532 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5116 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9667 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.4382 | 6 | 0 | 6 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_siren | het | 21.4286 | 12.2449 | 85.7143 | 75.8621 | 6 | 43 | 6 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 26.2295 | 25.0000 | 27.5862 | 55.3846 | 6 | 18 | 8 | 21 | 14 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | * | 72.0000 | 75.0000 | 69.2308 | 92.6966 | 6 | 2 | 9 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | homalt | 73.8462 | 75.0000 | 72.7273 | 91.6667 | 6 | 2 | 8 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | tech_badpromoters | * | 57.1429 | 46.1538 | 75.0000 | 50.0000 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.2222 | 66.6667 | 58.3333 | 94.7368 | 6 | 3 | 7 | 5 | 3 | 60.0000 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 6 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 6 | 10 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9426 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5806 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6378 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.8102 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0443 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8087 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6835 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5309 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.1348 | 6 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 90.3226 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2584 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9414 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7033 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3094 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||