PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39501-39550 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9443 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.3118 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | C6_15 | * | * | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C6_15 | * | het | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.2147 | 41.6667 | 81.8182 | 76.5957 | 5 | 7 | 9 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.9058 | 5 | 3 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 98.5542 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 81.4815 | 5 | 7 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 62.5000 | 83.3333 | 72.7273 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.5124 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9757 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.0469 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.6667 | 62.5000 | 3.5211 | 41.5638 | 5 | 3 | 5 | 137 | 82 | 59.8540 | |
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.6877 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.8235 | 45.4545 | 83.3333 | 84.2105 | 5 | 6 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 62.5000 | 71.4286 | 74.5455 | 5 | 3 | 10 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 95.3125 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 95.4545 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | hetalt | 71.4286 | 55.5556 | 100.0000 | 91.9355 | 5 | 4 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1832 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3529 | 5 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 50.0000 | 75.0000 | 96.8627 | 5 | 5 | 6 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.6667 | 5 | 1 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 71.4286 | 100.0000 | 55.5556 | 99.3767 | 5 | 0 | 5 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 58.8235 | 41.6667 | 100.0000 | 70.3704 | 5 | 7 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 33.3333 | 100.0000 | 20.0000 | 92.9178 | 5 | 0 | 5 | 20 | 4 | 20.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | het | 50.0000 | 55.5556 | 45.4545 | 92.5676 | 5 | 4 | 5 | 6 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.7778 | 19.2308 | 50.0000 | 95.0739 | 5 | 21 | 5 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | het | 66.6667 | 62.5000 | 71.4286 | 82.9268 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | het | 62.5000 | 55.5556 | 71.4286 | 88.7097 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | het | 62.5000 | 55.5556 | 71.4286 | 89.7059 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | het | 62.5000 | 55.5556 | 71.4286 | 89.8551 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 90.3846 | 5 | 4 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 55.5556 | 0.0000 | 95.4545 | 5 | 4 | 0 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | homalt | 50.0000 | 41.6667 | 62.5000 | 87.6923 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 47.6190 | 55.5556 | 41.6667 | 96.1905 | 5 | 4 | 5 | 7 | 4 | 57.1429 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9316 | 5 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | HG002complexvar | * | 80.7714 | 71.4286 | 92.9260 | 89.3893 | 5 | 2 | 289 | 22 | 4 | 18.1818 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | het | 80.8034 | 71.4286 | 93.0108 | 89.6031 | 5 | 2 | 173 | 13 | 1 | 7.6923 | |