PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39451-39500 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8648 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8723 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5652 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.7047 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8355 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8992 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.5836 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 58.8235 | 41.6667 | 100.0000 | 57.1429 | 5 | 7 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.8678 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.9677 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | segdup | hetalt | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 62.5000 | 55.5556 | 71.4286 | 98.1818 | 5 | 4 | 5 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 93.4783 | 5 | 3 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 94.0000 | 5 | 3 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 94.4444 | 5 | 4 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.3333 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 95.6140 | 5 | 2 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2381 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.1456 | 5 | 3 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | decoy | * | 64.0777 | 50.0000 | 89.1892 | 99.8767 | 5 | 5 | 33 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 7.6596 | 4.0000 | 90.0000 | 81.1321 | 5 | 120 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.7320 | 5 | 4 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.5163 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.6887 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7742 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.5709 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4820 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4910 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.6237 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.9798 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||