PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39401-39450 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 5 | 0 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 5 | 1 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 93.9394 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 20.8333 | 100.0000 | 90.9091 | 5 | 19 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 52.6316 | 45.4545 | 62.5000 | 84.3137 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 71.4286 | 83.3333 | 62.5000 | 81.3953 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.1969 | 0.0000 | 0.0000 | 5 | 2534 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2283 | 0.0000 | 0.0000 | 5 | 2185 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.7800 | 0.0000 | 0.0000 | 5 | 636 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.8908 | 5 | 1 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.4874 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 98.1685 | 5 | 3 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2830 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6303 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0588 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0711 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 93.0233 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 93.8776 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 93.8776 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.1220 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 93.0556 | 5 | 1 | 5 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 71.4286 | 62.5000 | 83.3333 | 96.5714 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.3913 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4225 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.5556 | 100.0000 | 5 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l125_m0_e0 | * | 50.0000 | 33.3333 | 100.0000 | 96.7949 | 5 | 10 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 64.2857 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.9355 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 94.7368 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 71.4286 | 55.5556 | 100.0000 | 92.8571 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 98.5366 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 98.5507 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 98.2332 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2281 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5035 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 5 | 0 | 5 | 0 | 0 | ||