PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39301-39350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 95.9350 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.0630 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.5035 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.6216 | 5 | 4 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | het | 62.5000 | 45.4545 | 100.0000 | 99.2690 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | * | 58.8235 | 41.6667 | 100.0000 | 72.2222 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.9231 | 62.5000 | 100.0000 | 78.2609 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.2406 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.7949 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | * | 32.2581 | 19.2308 | 100.0000 | 96.8354 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.8038 | 5 | 5 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.6464 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 58.8235 | 41.6667 | 100.0000 | 61.5385 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 93.2432 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | * | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | het | 83.3333 | 71.4286 | 100.0000 | 70.5882 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | hetalt | 52.6316 | 35.7143 | 100.0000 | 93.4211 | 5 | 9 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 43.4783 | 29.4118 | 83.3333 | 99.2780 | 5 | 12 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | decoy | het | 78.9474 | 83.3333 | 75.0000 | 99.9698 | 5 | 1 | 6 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1836 | 0.0000 | 0.0000 | 5 | 2718 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.7830 | 26.3158 | 81.4815 | 82.9114 | 5 | 14 | 22 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 28.6738 | 21.7391 | 42.1053 | 61.2245 | 5 | 18 | 8 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | homalt | 43.7956 | 41.6667 | 46.1538 | 91.0345 | 5 | 7 | 6 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.7552 | 5 | 3 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 9.8039 | 5.1546 | 100.0000 | 72.7273 | 5 | 92 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 41.6667 | 26.3158 | 100.0000 | 86.7925 | 5 | 14 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | homalt | 94.1176 | 100.0000 | 88.8889 | 95.9821 | 5 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.3563 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.4000 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 30.3030 | 17.8571 | 100.0000 | 73.6842 | 5 | 23 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | homalt | 87.5912 | 83.3333 | 92.3077 | 87.2549 | 5 | 1 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 73.5849 | 5 | 3 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 74.1379 | 5 | 3 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | decoy | het | 83.3333 | 83.3333 | 83.3333 | 99.9657 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.7879 | 0.0000 | 0.0000 | 5 | 127 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.2587 | 0.0000 | 0.0000 | 5 | 1928 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.2593 | 0.0000 | 0.0000 | 5 | 1923 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 99.1482 | 5 | 1 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3032 | 0.0000 | 0.0000 | 5 | 1644 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2744 | 0.0000 | 0.0000 | 5 | 1817 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 71.4286 | 83.3333 | 99.4902 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7393 | 2.5381 | 35.7143 | 92.6316 | 5 | 192 | 5 | 9 | 7 | 77.7778 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5309 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |