PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39251-39300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 83.3333 | 83.3333 | 83.3333 | 98.4085 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 74.1379 | 5 | 3 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 93.5323 | 5 | 2 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.2701 | 100.0000 | 98.5507 | 78.2334 | 5 | 0 | 68 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0385 | 100.0000 | 98.0952 | 76.5101 | 5 | 0 | 103 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 50.0000 | 40.0000 | 96.7213 | 5 | 5 | 4 | 6 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8293 | 5 | 0 | 27 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.0813 | 5 | 0 | 27 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 55.5556 | 55.5556 | 55.5556 | 87.3239 | 5 | 4 | 5 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.3289 | 100.0000 | 98.6667 | 70.3557 | 5 | 0 | 74 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | hetalt | 97.4359 | 100.0000 | 95.0000 | 87.7301 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 62.5000 | 100.0000 | 50.0000 | 5 | 3 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.0930 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 100.0000 | 5 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 5 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 97.6471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.7273 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.7679 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 10.3093 | 5.7471 | 50.0000 | 77.7778 | 5 | 82 | 5 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 14.4928 | 8.4746 | 50.0000 | 68.4211 | 5 | 54 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 93.7500 | 5 | 4 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 95.6522 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2609 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 50.0000 | 45.4545 | 98.2026 | 5 | 5 | 5 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 2.0243 | 0.0000 | 0.0000 | 5 | 242 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 99.4808 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5297 | 0.0000 | 0.0000 | 5 | 939 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.6378 | 0.0000 | 0.0000 | 5 | 779 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | homalt | 71.4286 | 55.5556 | 100.0000 | 40.0000 | 5 | 4 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 6.0241 | 3.1056 | 100.0000 | 68.7500 | 5 | 156 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.9091 | 83.3333 | 100.0000 | 99.1678 | 5 | 1 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.3471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.7917 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.9495 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 1.4925 | 0.0000 | 0.0000 | 5 | 330 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2283 | 0.0000 | 0.0000 | 5 | 2185 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | * | 50.0000 | 62.5000 | 41.6667 | 94.5701 | 5 | 3 | 5 | 7 | 3 | 42.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 71.4286 | 62.5000 | 83.3333 | 88.8889 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.2825 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.6667 | 50.0000 | 35.7143 | 97.5567 | 5 | 5 | 5 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||