PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38851-38900 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9439 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.1698 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.8378 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 84.8485 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 85.1852 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 88.8889 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 88.8889 | 80.0000 | 100.0000 | 89.4737 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 80.7692 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7895 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.5128 | 14.8148 | 33.3333 | 91.0891 | 4 | 23 | 3 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.5714 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 4 | 2 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m0_e0 | * | 57.1429 | 50.0000 | 66.6667 | 96.5909 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | * | 57.1429 | 50.0000 | 66.6667 | 97.2603 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | * | 57.1429 | 50.0000 | 66.6667 | 97.4138 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6508 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.9873 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 4 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 96.6216 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.4029 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8944 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.1220 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9263 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.9925 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 87.5000 | 4 | 1 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 89.5833 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6387 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 95.7895 | 4 | 5 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | * | 72.7273 | 57.1429 | 100.0000 | 97.5155 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 36.3636 | 80.0000 | 99.8480 | 4 | 7 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3333 | 40.0000 | 80.0000 | 99.8413 | 4 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 61.5385 | 50.0000 | 80.0000 | 99.1776 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.0149 | 4 | 3 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 51.0638 | 44.4444 | 60.0000 | 98.6226 | 4 | 5 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 52.1739 | 40.0000 | 75.0000 | 99.2395 | 4 | 6 | 3 | 1 | 1 | 100.0000 | |