PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38451-38500 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0602 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0366 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.5833 | 4 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 95.6204 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0414 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9281 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3193 | 4 | 3 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.4962 | 4 | 3 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0803 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.5660 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 97.0588 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5812 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.5962 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.1892 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 75.0000 | 4 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | * | 99.2126 | 100.0000 | 98.4375 | 83.7150 | 4 | 0 | 378 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | het | 99.1354 | 100.0000 | 98.2857 | 78.8392 | 4 | 0 | 172 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.7477 | 0.0000 | 0.0000 | 4 | 531 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3091 | 0.0000 | 0.0000 | 4 | 1290 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.2474 | 0.0000 | 0.0000 | 4 | 1613 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 99.2233 | 4 | 1 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 99.4944 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 99.4985 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.5263 | 5.6338 | 80.0000 | 83.3333 | 4 | 67 | 4 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2342 | 0.0000 | 0.0000 | 4 | 1704 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | decoy | * | 80.0000 | 66.6667 | 100.0000 | 97.7401 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.0000 | 0.0000 | 0.0000 | 4 | 21 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 94.5312 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 95.5056 | 4 | 5 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5517 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5753 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.7480 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 94.2029 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 4 | 48 | 0 | 0 | 0 | ||