PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38251-38300 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.1538 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m1_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.6608 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5069 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.3344 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.4166 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.3998 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.7407 | 4 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.9799 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3958 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4359 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.5104 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 97.9933 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 98.0198 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9393 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8022 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.3488 | 4 | 4 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.3214 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 99.0050 | 4 | 5 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 76.1905 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 81.4815 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 57.1429 | 44.4444 | 80.0000 | 82.7586 | 4 | 5 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | het | 48.1928 | 36.3636 | 71.4286 | 91.4634 | 4 | 7 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | het | 40.8163 | 28.5714 | 71.4286 | 93.0693 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 91.4286 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6170 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6842 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 94.5946 | 4 | 6 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | homalt | 57.1429 | 44.4444 | 80.0000 | 95.0495 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 30.7692 | 66.6667 | 77.7778 | 4 | 9 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 92.0455 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 66.6667 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 73.3333 | 4 | 11 | 4 | 0 | 0 | ||