PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37101-37150 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9866 | 3 | 0 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.2538 | 0.0000 | 0.0000 | 3 | 1179 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | HG002compoundhet | homalt | 37.5000 | 100.0000 | 23.0769 | 80.5970 | 3 | 0 | 3 | 10 | 10 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 83.3333 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.6897 | 12.5000 | 60.0000 | 75.0000 | 3 | 21 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.8272 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | tech_badpromoters | * | 75.0000 | 75.0000 | 75.0000 | 75.0000 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.3344 | 0.0000 | 0.0000 | 3 | 894 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.4680 | 0.0000 | 0.0000 | 3 | 638 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 31.5789 | 18.7500 | 100.0000 | 99.9839 | 3 | 13 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0392 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | hetalt | 54.5455 | 50.0000 | 60.0000 | 97.3404 | 3 | 3 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e1 | hetalt | 54.5455 | 50.0000 | 60.0000 | 97.3958 | 3 | 3 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.1453 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C1_5 | HG002complexvar | * | 42.8571 | 100.0000 | 3 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | HG002complexvar | het | 42.8571 | 100.0000 | 3 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | * | 75.0000 | 60.0000 | 100.0000 | 98.8806 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | * | 75.0000 | 60.0000 | 100.0000 | 98.8971 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.2718 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.3421 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 98.6111 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 33.3333 | 100.0000 | 87.8049 | 3 | 6 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 42.8571 | 37.5000 | 50.0000 | 25.0000 | 3 | 5 | 3 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 94.8052 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.1220 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.1807 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 11.5385 | 6.1224 | 100.0000 | 80.9524 | 3 | 46 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2441 | 3 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 88.8889 | 100.0000 | 80.0000 | 95.3271 | 3 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 53.3333 | 50.0000 | 57.1429 | 99.4104 | 3 | 3 | 12 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 15.3846 | 12.0000 | 21.4286 | 44.0000 | 3 | 22 | 3 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 21.4286 | 12.5000 | 75.0000 | 50.0000 | 3 | 21 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 64.2857 | 3 | 5 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 68.1818 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 73.0769 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 73.0769 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | * | 41.0959 | 27.2727 | 83.3333 | 80.0000 | 3 | 8 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |