PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37051-37100 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.7778 | 100.0000 | 95.6522 | 89.5810 | 3 | 0 | 88 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | hetalt | 98.9474 | 100.0000 | 97.9167 | 79.8319 | 3 | 0 | 47 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 3 | 0 | 43 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.9478 | 3 | 0 | 65 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | hetalt | 98.0392 | 100.0000 | 96.1538 | 81.9444 | 3 | 0 | 25 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.9731 | 3 | 3 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | decoy | * | 66.6667 | 50.0000 | 100.0000 | 98.8327 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 98.8338 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.3448 | 100.0000 | 5.4545 | 83.2317 | 3 | 0 | 3 | 52 | 49 | 94.2308 | |
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | het | 50.0000 | 33.3333 | 100.0000 | 70.0000 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 20.0000 | 11.1111 | 100.0000 | 97.3913 | 3 | 24 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 31.5789 | 18.7500 | 100.0000 | 94.2308 | 3 | 13 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.0297 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | * | 33.3333 | 20.0000 | 100.0000 | 97.3214 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e0 | * | 33.3333 | 20.0000 | 100.0000 | 97.5610 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | * | 33.3333 | 20.0000 | 100.0000 | 97.5806 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 96.2500 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 96.7391 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 97.1963 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1613 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | * | 54.5455 | 37.5000 | 100.0000 | 99.1690 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | * | 54.5455 | 37.5000 | 100.0000 | 99.2063 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 60.0000 | 42.8571 | 100.0000 | 99.3088 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 46.1538 | 30.0000 | 100.0000 | 99.5957 | 3 | 7 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 54.5455 | 37.5000 | 100.0000 | 99.2228 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9255 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 99.5580 | 3 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 94.9367 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 94.8718 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.2941 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 46.1538 | 60.0000 | 37.5000 | 97.0803 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 46.1538 | 60.0000 | 37.5000 | 97.1119 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9740 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 2.9557 | 1.5228 | 50.0000 | 87.7551 | 3 | 194 | 3 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.1651 | 3 | 3 | 3 | 3 | 3 | 100.0000 | |