PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
36301-36350 / 86044 show all
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
99.0385
21100
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8373
23200
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.9583
21100
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.8337
22200
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
99.5787
21211
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
80.0000
100.0000
66.6667
97.3214
20211
100.0000
ckim-isaacINDELC6_15HG002complexvar*
0.0000
50.0000
0.0000
0.0000
22000
ckim-isaacINDELC6_15HG002complexvarhet
0.0000
50.0000
0.0000
0.0000
22000
ckim-isaacINDELD16_PLUSHG002compoundhethomalt
23.5294
25.0000
22.2222
66.6667
26276
85.7143
ckim-isaacINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
96.4912
20200
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.7742
22200
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.7213
22200
ckim-isaacINDELD16_PLUSmap_l100_m0_e0het
16.6667
10.5263
40.0000
95.2381
217231
33.3333
ckim-isaacINDELD16_PLUSmap_l100_m0_e0hetalt
66.6667
50.0000
100.0000
92.5926
22200
ckim-isaacINDELD16_PLUSmap_l100_m1_e0homalt
23.5294
13.3333
100.0000
94.4444
213200
ckim-isaacINDELD16_PLUSmap_l100_m2_e0homalt
22.2222
12.5000
100.0000
95.1220
214200
ckim-isaacINDELD16_PLUSmap_l100_m2_e1homalt
22.2222
12.5000
100.0000
95.2381
214200
ckim-isaacINDELD16_PLUSmap_l125_m0_e0*
26.6667
16.6667
66.6667
96.5517
210210
0.0000
ckim-isaacINDELD16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
90.9091
21200
ckim-isaacINDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
93.1034
21200
ckim-isaacINDELD16_PLUSmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
93.1034
22200
ckim-isaacINDELD16_PLUSmap_l150_m1_e0*
22.2222
13.3333
66.6667
97.7099
213210
0.0000
ckim-isaacINDELD16_PLUSmap_l150_m2_e0het
21.0526
12.5000
66.6667
97.5806
214210
0.0000
ckim-isaacINDELD16_PLUSmap_l150_m2_e1het
21.0526
12.5000
66.6667
97.6190
214210
0.0000
ckim-isaacINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9618
20200
ckim-isaacINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7805
20200
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7730
20200
ckim-isaacINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.0000
21200
ckim-isaacINDELD1_5map_l250_m1_e0hetalt
66.6667
100.0000
21000
ckim-isaacINDELD1_5map_l250_m2_e0hetalt
66.6667
100.0000
21000
ckim-isaacINDELD1_5map_l250_m2_e1hetalt
66.6667
100.0000
21000
ckim-isaacINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
80.0000
66.6667
100.0000
96.8750
21200
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
ckim-isaacINDELD6_15map_l150_m0_e0homalt
44.4444
28.5714
100.0000
90.4762
25200
ckim-isaacINDELD6_15map_l250_m0_e0*
50.0000
33.3333
100.0000
98.5612
24200
ckim-isaacINDELD6_15map_l250_m1_e0homalt
57.1429
40.0000
100.0000
91.3043
23200
ckim-isaacINDELD6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
92.5926
24200
ckim-isaacINDELD6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
93.1034
24200
ckim-isaacINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
71.4286
20200
ckim-isaacINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
25.0000
20300
ckim-isaacINDELI1_5map_l150_m0_e0hetalt
80.0000
66.6667
100.0000
97.0149
21200
ckim-isaacINDELI6_15func_cdshetalt
66.6667
50.0000
100.0000
33.3333
22200
ckim-vqsrINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.9167
20200
ckim-vqsrINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9857
20200
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3769
20200
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3590
20200
ckim-vqsrINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.5185
21200
ckim-vqsrINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200