PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35851-35900 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 98.5294 | 2 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 6.7797 | 3.5088 | 100.0000 | 99.9898 | 2 | 55 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 9.0909 | 4.7619 | 100.0000 | 99.9785 | 2 | 40 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 11.1111 | 8.3333 | 16.6667 | 72.7273 | 2 | 22 | 1 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.3333 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.5294 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 18.1818 | 10.0000 | 100.0000 | 98.5507 | 2 | 18 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.2958 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 57.1429 | 66.6667 | 50.0000 | 99.1416 | 2 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6324 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6914 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6970 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | het | 10.2564 | 6.6667 | 22.2222 | 94.8864 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | het | 10.2564 | 6.6667 | 22.2222 | 95.4315 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | het | 10.2564 | 6.6667 | 22.2222 | 95.5882 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | * | 12.5000 | 7.4074 | 40.0000 | 98.1132 | 2 | 25 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | het | 36.3636 | 28.5714 | 50.0000 | 63.6364 | 2 | 5 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 12.1212 | 28.5714 | 7.6923 | 96.3121 | 2 | 5 | 2 | 24 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0099 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | decoy | het | 42.1053 | 33.3333 | 57.1429 | 99.9727 | 2 | 4 | 4 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 16.0000 | 9.5238 | 50.0000 | 99.9920 | 2 | 19 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.8163 | 0.4098 | 100.0000 | 90.4762 | 2 | 486 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 1.1019 | 0.5540 | 100.0000 | 82.3529 | 2 | 359 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.5563 | 0.2789 | 100.0000 | 85.7143 | 2 | 715 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 16.0000 | 8.6957 | 100.0000 | 77.7778 | 2 | 21 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 5.6818 | 2.9412 | 83.3333 | 90.9091 | 2 | 66 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 8.6207 | 4.5455 | 83.3333 | 89.2857 | 2 | 42 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 5.9197 | 3.2787 | 30.4348 | 64.6154 | 2 | 59 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.9216 | 0.0000 | 0.0000 | 2 | 49 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | decoy | het | 85.7143 | 100.0000 | 75.0000 | 99.9649 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 75.0000 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.8333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 33.3333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 2.8369 | 100.0000 | 1.4388 | 74.9550 | 2 | 0 | 2 | 137 | 3 | 2.1898 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 3.8462 | 100.0000 | 1.9608 | 75.9434 | 2 | 0 | 2 | 100 | 3 | 3.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 20.0000 | 100.0000 | 11.1111 | 88.6792 | 2 | 0 | 2 | 16 | 0 | 0.0000 | |