PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
35601-35650 / 86044 show all
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7849
22200
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
95.7447
20200
jli-customINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.6395
20200
jli-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.1818
20210
0.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.1818
20210
0.0000
jli-customINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
96.6667
20200
jli-customINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9465
20200
jli-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3056
20200
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2883
20200
jli-customINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.5612
21200
jli-customINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
jli-customINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.5904
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
89.4737
20200
jli-customINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.6102
20200
jli-customINDELD6_15map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.1538
20200
jli-customINDELD6_15map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
96.8750
20200
jli-customINDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.9231
20200
jli-customINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
83.3333
20200
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
91.6667
22200
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
66.6667
100.0000
21000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
40.0000
20300
jli-customINDELI16_PLUSmap_l100_m0_e0homalt
100.0000
100.0000
100.0000
98.6667
20200
jli-customINDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
90.9091
21200
jli-customINDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
jli-customINDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
92.0000
21200
jli-customINDELI16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
98.5075
20200
jli-customINDELI16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
87.5000
21200
jli-customINDELI16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
88.2353
21200
jli-customINDELI16_PLUSmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
88.2353
21200
jli-customINDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
93.7500
20210
0.0000
jli-customINDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
75.0000
20200
jli-customINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
60.0000
20200
jli-customINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20200
jli-customINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
89.6552
20210
0.0000
jli-customINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.9592
20200
jli-customINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.3471
20200
jli-customINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.3740
20200
jli-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8500
20200
jli-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4203
20200
jli-customINDELI6_15map_l150_m0_e0het
57.1429
50.0000
66.6667
97.1154
22211
100.0000
jli-customINDELI6_15map_l250_m1_e0het
57.1429
50.0000
66.6667
97.6378
22211
100.0000
jli-customINDELI6_15map_l250_m1_e0homalt
80.0000
66.6667
100.0000
97.0149
21200
jmaeng-gatkINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
20200
jmaeng-gatkINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9864
20200
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3485
20200
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3289
20200
jmaeng-gatkINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.6111
21200