PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35551-35600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 92.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 95.1220 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 88.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 57.1429 | 50.0000 | 66.6667 | 87.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8235 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0521 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8429 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6330 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 94.2857 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.6552 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6577 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7379 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.3552 | 66.6667 | 95.0139 | 97.4690 | 2 | 1 | 343 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.1364 | 66.6667 | 88.7417 | 97.5582 | 2 | 1 | 134 | 17 | 1 | 5.8824 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3035 | 0.0000 | 0.0000 | 2 | 657 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3035 | 0.0000 | 0.0000 | 2 | 657 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 86.3636 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 85.7143 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 57.1429 | 66.6667 | 50.0000 | 81.8182 | 2 | 1 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 80.9524 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.7857 | 0.0000 | 0.0000 | 2 | 110 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 2 | 58 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.3774 | 0.0000 | 0.0000 | 2 | 528 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.2787 | 0.0000 | 0.0000 | 2 | 59 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.3529 | 0.0000 | 0.0000 | 2 | 83 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3043 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5926 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.6522 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |