PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | * | 14.2857 | 100.0000 | 1 | 6 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | het | 14.2857 | 100.0000 | 1 | 6 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9592 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9439 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9972 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 33.3333 | 99.9731 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9890 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9078 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 91.3043 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.1429 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 96.1538 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||