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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
85601-85650 / 86044 show all
cchapple-customSNPtiHG002complexvarhet
99.7945
99.6988
99.8903
17.3501
313818948313318344249
72.3837
hfeng-pmm3SNPtiHG002complexvarhet
99.8511
99.7192
99.9834
16.8098
3138828843138325210
19.2308
gduggal-bwafbSNPtiHG002complexvarhet
99.7807
99.7408
99.8207
18.4948
313950816314019564202
35.8156
ltrigg-rtg2SNPtiHG002complexvarhet
99.8501
99.7528
99.9475
16.9710
31398877831399216546
27.8788
rpoplin-dv42SNPtiHG002complexvarhet
99.9002
99.8243
99.9761
16.8206
3142135533141527555
73.3333
jlack-gatkSNPtiHG002complexvarhet
99.8980
99.8818
99.9142
17.5660
31439437231434027088
32.5926
eyeh-varpipeSNPtiHG002complexvarhet
99.8630
99.8948
99.8311
17.2379
314435331297366503109
21.6700
jli-customSNPtiHG002complexvarhet
99.9353
99.9002
99.9704
16.9557
3144523143144189332
34.4086
dgrover-gatkSNPtiHG002complexvarhet
99.9452
99.9164
99.9739
17.0118
3145032633144498232
39.0244
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
ckim-dragenSNPtiHG002complexvarhet
99.9189
99.9266
99.9111
17.5776
314535231314661280125
44.6429
eyeh-varpipeINDEL***
92.5779
91.3854
93.8021
63.3717
314861296813171112095320114
95.9958
ckim-isaacINDEL***
95.8099
93.7006
98.0163
48.2658
3228382170432185765144603
70.6632
mlin-fermikitINDEL***
95.5997
94.8918
96.3183
54.9677
326942176003265721248312097
96.9078
gduggal-bwafbINDEL***
96.9474
95.5004
98.4390
56.3888
3290391550334249254314691
86.3745
qzeng-customINDEL***
96.8316
96.8703
96.7929
56.5999
33375910783347076115005547
48.2348
ndellapenna-hhgaINDEL***
97.3838
97.0938
97.6756
75.8762
3345291001333524979786638
83.2038
egarrison-hhgaINDEL***
97.4253
97.1646
97.6874
75.7607
334773976933527679376682
84.1880
ltrigg-rtg1INDEL***
99.0160
98.3355
99.7061
56.0561
3388065735338554998454
45.4910
asubramanian-gatkINDEL***
98.8418
98.5404
99.1451
71.3671
339513502933944229271779
60.7790
raldana-dualsentieonINDEL***
99.1095
98.7566
99.4648
57.7282
340258428434012018301626
88.8525
rpoplin-dv42INDEL***
98.9802
98.7882
99.1728
78.6199
340367417534037028392640
92.9905
jlack-gatkINDEL***
98.6899
98.8138
98.5664
60.1151
340455408734033249502708
54.7071
cchapple-customINDEL***
99.1388
98.8448
99.4346
57.2260
340562398036352020671592
77.0198
ltrigg-rtg2INDEL***
99.2539
98.8759
99.6347
56.1284
34066838733404111248516
41.3462
hfeng-pmm2INDEL***
99.3119
99.0152
99.6103
57.8578
341149339334101513341012
75.8621
hfeng-pmm3INDEL***
99.3628
99.0161
99.7120
56.9384
3411523390341013985798
81.0152
jmaeng-gatkINDEL***
99.1098
99.0216
99.1981
60.9184
341171337134103827571621
58.7958
hfeng-pmm1INDEL***
99.3397
99.0289
99.6526
57.3618
34119633463410571189887
74.6005
ckim-vqsrINDEL***
99.2541
99.0614
99.4476
60.7768
341308323434116718951532
80.8443
jli-customINDEL***
99.3675
99.0788
99.6580
57.6935
34136831743412131171951
81.2126
ckim-gatkINDEL***
99.2271
99.1551
99.2992
60.7185
341631291134149224101553
64.4398
ckim-dragenINDEL***
99.1359
99.1574
99.1143
60.3466
341639290334130330502010
65.9016
bgallagher-sentieonINDEL***
99.2678
99.2143
99.3213
59.6036
341835270734170323351924
82.3983
astatham-gatkINDEL***
99.3424
99.2404
99.4446
59.9126
341925261734178819091550
81.1943
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658
ckim-isaacSNPtv*homalt
98.1562
96.3855
99.9931
16.5795
363492136313635152518
72.0000
gduggal-bwaplatSNPtv*homalt
98.6202
97.3009
99.9757
22.0523
366944101793668718982
92.1348
asubramanian-gatkSNPtv*homalt
98.7491
97.5342
99.9946
20.2324
36782492993678102017
85.0000
ckim-vqsrSNPtv*homalt
98.8369
97.7055
99.9948
20.5893
36847086533684561916
84.2105
gduggal-snapplatSNPtv*homalt
99.0993
98.3541
99.8560
22.6563
3709166207370887535142
26.5421
anovak-vgSNPtv*homalt
99.0679
98.8237
99.3132
19.4559
372687443637134125681960
76.3240
mlin-fermikitSNPtv*homalt
98.8702
98.8876
98.8528
20.1908
372928419537292343284101
94.7551
gduggal-snapvardSNPtv*homalt
99.4119
98.9054
99.9237
19.2463
3729954128370593283154
54.4170
gduggal-bwavardSNPtv*homalt
99.4965
99.0327
99.9647
19.0358
373475364837122013186
65.6489
ckim-gatkSNPtv*homalt
99.5305
99.0738
99.9914
20.3623
37363034933736163219
59.3750
jmaeng-gatkSNPtv*homalt
99.5328
99.0793
99.9904
20.3157
37365134723736373623
63.8889
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
ciseli-customSNPtv*homalt
98.4608
99.4400
97.5007
22.4395
375011211237361095773591
37.4961
gduggal-snapfbSNPtv*homalt
99.5195
99.7842
99.2562
25.9790
3763098143763282820182
6.4539