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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
85551-85600 / 86044 show all
gduggal-snapvardINDEL***
83.0264
83.4429
82.6139
57.1178
287491570453277556897651941
75.3030
cchapple-customSNP*HG002complexvarhomalt
99.8273
99.6680
99.9871
18.5601
2876169582863433732
86.4865
gduggal-snapfbSNP*HG002complexvarhomalt
99.5552
99.6857
99.4250
21.2913
2876689072877331664399
23.9784
gduggal-bwafbSNP*HG002complexvarhomalt
99.8832
99.8222
99.9441
19.8833
288062513288090161137
85.0932
ndellapenna-hhgaSNP*HG002complexvarhomalt
99.8626
99.8292
99.8960
19.9404
288081493288110300268
89.3333
egarrison-hhgaSNP*HG002complexvarhomalt
99.8875
99.8351
99.9400
19.8887
288098476288126173140
80.9249
ltrigg-rtg1SNP*HG002complexvarhomalt
99.9052
99.8382
99.9722
19.7176
2881074672880528073
91.2500
ltrigg-rtg2SNP*HG002complexvarhomalt
99.9218
99.8676
99.9761
19.6026
2881923822881186968
98.5507
jlack-gatkSNP*HG002complexvarhomalt
99.9456
99.9096
99.9816
19.7398
2883132612882845346
86.7925
eyeh-varpipeSNP*HG002complexvarhomalt
99.9303
99.9127
99.9480
18.2871
288323252263218137103
75.1825
astatham-gatkSNP*HG002complexvarhomalt
99.9516
99.9158
99.9875
19.8527
2883312432883063634
94.4444
ckim-dragenSNP*HG002complexvarhomalt
99.9551
99.9245
99.9858
19.8995
2883562182885654141
100.0000
jli-customSNP*HG002complexvarhomalt
99.9614
99.9404
99.9823
19.9145
2884021722883855137
72.5490
rpoplin-dv42SNP*HG002complexvarhomalt
99.9511
99.9421
99.9601
19.9304
288407167288378115109
94.7826
ghariani-varprowlSNP*HG002complexvarhomalt
99.6051
99.9428
99.2696
21.6199
28840716528852621231441
67.8756
dgrover-gatkSNP*HG002complexvarhomalt
99.9653
99.9435
99.9872
19.8551
2884111632883863735
94.5946
jpowers-varprowlSNP*HG002complexvarhomalt
99.6393
99.9463
99.3342
21.7803
28841915528854219341452
75.0776
bgallagher-sentieonSNP*HG002complexvarhomalt
99.9685
99.9494
99.9875
19.8511
2884281462884033634
94.4444
raldana-dualsentieonSNP*HG002complexvarhomalt
99.9794
99.9695
99.9893
19.8637
288486882884713129
93.5484
hfeng-pmm2SNP*HG002complexvarhomalt
99.9776
99.9726
99.9827
20.0544
288495792884815044
88.0000
hfeng-pmm3SNP*HG002complexvarhomalt
99.9822
99.9730
99.9913
19.9554
288496782884782524
96.0000
hfeng-pmm1SNP*HG002complexvarhomalt
99.9818
99.9754
99.9882
20.0017
288503712884883432
94.1176
ckim-isaacSNPtiHG002complexvarhet
96.4266
93.1447
99.9482
15.3403
2931882157829334315218
11.8421
jpowers-varprowlINDEL***
86.4885
85.2886
87.7226
56.7888
293855506872936274109540121
97.6299
gduggal-bwaplatINDEL***
92.6621
87.0843
99.0034
65.2816
3000424450029991730191851
61.3117
gduggal-bwavardINDEL***
87.3464
87.1769
87.5166
58.1126
300361441812993414269838856
91.0019
ghariani-varprowlINDEL***
87.2025
87.3272
87.0781
72.0067
300877436633006324461240345
90.4353
ciseli-customSNPtiHG002complexvarhet
96.3296
95.9112
96.7516
18.3708
3018961287029942210053353
3.5114
anovak-vgSNPtiHG002complexvarhet
97.2372
96.4650
98.0220
17.7484
3036391112729961060464694
77.6381
mlin-fermikitSNPtiHG002complexvarhet
98.1941
96.4761
99.9743
15.7268
303674110923036417814
17.9487
gduggal-snapvardSNPtiHG002complexvarhet
97.7415
96.8929
98.6052
20.9330
304985978030044842501602
37.6941
asubramanian-gatkSNPtiHG002complexvarhet
98.4409
96.9492
99.9794
17.3446
30516396033051136321
33.3333
gduggal-bwaplatSNPtiHG002complexvarhet
97.7064
97.0801
98.3410
19.6959
30557591913061615165589
11.4037
gduggal-bwavardSNPtiHG002complexvarhet
98.2415
97.2329
99.2714
18.7202
306056871030205022171521
68.6062
gduggal-snapplatSNPtiHG002complexvarhet
97.6877
97.4934
97.8828
21.8010
30687678903074936651990
14.8850
astatham-gatkSNPtiHG002complexvarhet
98.7599
97.5636
99.9860
17.3084
30709776693070424317
39.5349
ckim-vqsrSNPtiHG002complexvarhet
99.1493
98.3302
99.9822
17.7224
30951052563094625518
32.7273
qzeng-customSNPtiHG002complexvarhet
99.0720
98.3388
99.8162
18.0479
3095375229307433566153
27.0318
jpowers-varprowlSNPtiHG002complexvarhet
99.4252
98.9938
99.8603
18.1914
311597316731170743690
20.6422
gduggal-snapfbINDEL***
92.2602
90.5733
94.0112
57.2799
31206332479322983205759778
47.5237
jmaeng-gatkSNPtiHG002complexvarhet
99.7293
99.5044
99.9553
17.6005
313206156031315614049
35.0000
ckim-gatkSNPtiHG002complexvarhet
99.7549
99.5549
99.9557
17.5388
313365140131331513950
35.9712
ndellapenna-hhgaSNPtiHG002complexvarhet
99.7687
99.5752
99.9630
16.8677
313429133731343011649
42.2414
gduggal-snapfbSNPtiHG002complexvarhet
99.0494
99.5771
98.5273
20.1517
31343513313138974692557
11.8713
egarrison-hhgaSNPtiHG002complexvarhet
99.8118
99.6651
99.9589
16.9554
313712105431371512951
39.5349
ghariani-varprowlSNPtiHG002complexvarhet
99.4535
99.6801
99.2280
19.8744
3137541007313878244284
3.4398
ltrigg-rtg1SNPtiHG002complexvarhet
99.8233
99.6823
99.9646
17.0356
313766100031377811123
20.7207
hfeng-pmm1SNPtiHG002complexvarhet
99.8377
99.6899
99.9860
16.6225
3137909763137394410
22.7273
hfeng-pmm2SNPtiHG002complexvarhet
99.8373
99.6928
99.9822
16.6591
313799967313749567
12.5000
raldana-dualsentieonSNPtiHG002complexvarhet
99.8369
99.6928
99.9815
16.7345
313799967313748589
15.5172