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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85451-85500 / 86044 show all | |||||||||||||||
gduggal-snapplat | SNP | ti | HG002complexvar | homalt | 99.0919 | 98.3790 | 99.8152 | 19.4474 | 190328 | 3136 | 190130 | 352 | 203 | 57.6705 | |
gduggal-bwavard | INDEL | * | * | het | 89.1538 | 98.0771 | 81.7188 | 63.1804 | 190400 | 3733 | 190127 | 42533 | 38764 | 91.1386 | |
mlin-fermikit | SNP | ti | HG002complexvar | homalt | 98.3813 | 98.4958 | 98.2669 | 18.8239 | 190554 | 2910 | 190572 | 3361 | 3261 | 97.0247 | |
qzeng-custom | INDEL | * | * | het | 97.1762 | 98.2811 | 96.0960 | 58.8639 | 190796 | 3337 | 217691 | 8844 | 3946 | 44.6178 | |
qzeng-custom | SNP | ti | HG002complexvar | homalt | 99.2303 | 98.6432 | 99.8245 | 18.6252 | 190839 | 2625 | 186005 | 327 | 247 | 75.5352 | |
ckim-gatk | SNP | ti | HG002complexvar | homalt | 99.3341 | 98.6902 | 99.9864 | 18.4846 | 190929 | 2534 | 190919 | 26 | 23 | 88.4615 | |
jmaeng-gatk | SNP | ti | HG002complexvar | homalt | 99.3419 | 98.7072 | 99.9848 | 18.4737 | 190962 | 2501 | 190952 | 29 | 26 | 89.6552 | |
ghariani-varprowl | INDEL | * | * | het | 89.6326 | 98.5731 | 82.1789 | 64.2989 | 191361 | 2770 | 191449 | 41517 | 38150 | 91.8901 | |
ltrigg-rtg1 | INDEL | * | * | het | 99.1142 | 98.5886 | 99.6455 | 55.1307 | 191393 | 2740 | 190584 | 678 | 162 | 23.8938 | |
asubramanian-gatk | INDEL | * | * | het | 98.9698 | 98.6849 | 99.2562 | 61.7813 | 191580 | 2553 | 191238 | 1433 | 589 | 41.1026 | |
ciseli-custom | SNP | ti | HG002complexvar | homalt | 96.5088 | 99.0536 | 94.0915 | 19.4065 | 191633 | 1831 | 189105 | 11875 | 5178 | 43.6042 | |
ndellapenna-hhga | INDEL | * | * | het | 97.8590 | 98.8060 | 96.9301 | 56.3967 | 191815 | 2318 | 193328 | 6123 | 5425 | 88.6004 | |
cchapple-custom | INDEL | * | * | het | 99.2026 | 98.9188 | 99.4881 | 58.0034 | 192034 | 2099 | 238847 | 1229 | 782 | 63.6290 | |
egarrison-hhga | INDEL | * | * | het | 97.8735 | 98.9564 | 96.8141 | 57.0135 | 192107 | 2026 | 193181 | 6357 | 5653 | 88.9256 | |
raldana-dualsentieon | INDEL | * | * | het | 99.3035 | 99.0228 | 99.5858 | 57.9096 | 192236 | 1897 | 191867 | 798 | 611 | 76.5664 | |
hfeng-pmm2 | INDEL | * | * | het | 99.3911 | 99.1521 | 99.6313 | 58.9414 | 192487 | 1646 | 192126 | 711 | 412 | 57.9466 | |
ltrigg-rtg2 | INDEL | * | * | het | 99.3348 | 99.1568 | 99.5135 | 56.1055 | 192496 | 1637 | 191657 | 937 | 230 | 24.5464 | |
hfeng-pmm1 | INDEL | * | * | het | 99.4245 | 99.1923 | 99.6578 | 58.3471 | 192565 | 1568 | 192194 | 660 | 374 | 56.6667 | |
hfeng-pmm3 | INDEL | * | * | het | 99.4705 | 99.1923 | 99.7504 | 58.0356 | 192565 | 1568 | 192191 | 481 | 313 | 65.0728 | |
jli-custom | INDEL | * | * | het | 99.5119 | 99.3015 | 99.7232 | 58.0133 | 192777 | 1356 | 192389 | 534 | 340 | 63.6704 | |
rpoplin-dv42 | INDEL | * | * | het | 99.0459 | 99.3340 | 98.7595 | 59.2937 | 192840 | 1293 | 192749 | 2421 | 2250 | 92.9368 | |
cchapple-custom | SNP | ti | HG002complexvar | homalt | 99.8348 | 99.6852 | 99.9849 | 17.4009 | 192854 | 609 | 192184 | 29 | 25 | 86.2069 | |
gduggal-snapfb | SNP | ti | HG002complexvar | homalt | 99.6542 | 99.7054 | 99.6030 | 19.3776 | 192894 | 570 | 192940 | 769 | 240 | 31.2094 | |
jlack-gatk | INDEL | * | * | het | 98.8624 | 99.4076 | 98.3232 | 61.7242 | 192983 | 1150 | 192623 | 3285 | 1088 | 33.1202 | |
jmaeng-gatk | INDEL | * | * | het | 99.3015 | 99.4880 | 99.1156 | 62.5254 | 193139 | 994 | 192770 | 1720 | 614 | 35.6977 | |
ltrigg-rtg1 | SNP | ti | HG002complexvar | homalt | 99.9028 | 99.8341 | 99.9715 | 18.2456 | 193142 | 321 | 193049 | 55 | 54 | 98.1818 | |
gduggal-bwafb | SNP | ti | HG002complexvar | homalt | 99.8904 | 99.8351 | 99.9457 | 18.2578 | 193145 | 319 | 193159 | 105 | 88 | 83.8095 | |
ndellapenna-hhga | SNP | ti | HG002complexvar | homalt | 99.8705 | 99.8403 | 99.9007 | 18.4130 | 193154 | 309 | 193175 | 192 | 171 | 89.0625 | |
astatham-gatk | INDEL | * | * | het | 99.5127 | 99.4973 | 99.5281 | 60.7701 | 193157 | 976 | 192779 | 914 | 573 | 62.6915 | |
egarrison-hhga | SNP | ti | HG002complexvar | homalt | 99.8937 | 99.8480 | 99.9395 | 18.4037 | 193169 | 294 | 193188 | 117 | 94 | 80.3419 | |
ckim-vqsr | INDEL | * | * | het | 99.5204 | 99.5086 | 99.5323 | 62.3713 | 193179 | 954 | 192796 | 906 | 561 | 61.9205 | |
ltrigg-rtg2 | SNP | ti | HG002complexvar | homalt | 99.9240 | 99.8739 | 99.9741 | 18.1301 | 193219 | 244 | 193117 | 50 | 49 | 98.0000 | |
jlack-gatk | SNP | ti | HG002complexvar | homalt | 99.9491 | 99.9163 | 99.9819 | 18.2375 | 193301 | 162 | 193290 | 35 | 32 | 91.4286 | |
eyeh-varpipe | SNP | ti | HG002complexvar | homalt | 99.9332 | 99.9188 | 99.9475 | 17.3280 | 193307 | 157 | 180798 | 95 | 69 | 72.6316 | |
astatham-gatk | SNP | ti | HG002complexvar | homalt | 99.9545 | 99.9214 | 99.9876 | 18.3169 | 193311 | 152 | 193301 | 24 | 24 | 100.0000 | |
ckim-dragen | SNP | ti | HG002complexvar | homalt | 99.9527 | 99.9214 | 99.9840 | 18.3095 | 193311 | 152 | 193417 | 31 | 31 | 100.0000 | |
ckim-dragen | INDEL | * | * | het | 99.4503 | 99.5962 | 99.3048 | 61.2221 | 193349 | 784 | 192841 | 1350 | 335 | 24.8148 | |
dgrover-gatk | SNP | ti | HG002complexvar | homalt | 99.9661 | 99.9447 | 99.9876 | 18.3249 | 193356 | 107 | 193346 | 24 | 24 | 100.0000 | |
ghariani-varprowl | SNP | ti | HG002complexvar | homalt | 99.7133 | 99.9473 | 99.4805 | 19.5938 | 193359 | 102 | 193405 | 1010 | 705 | 69.8020 | |
jli-custom | SNP | ti | HG002complexvar | homalt | 99.9648 | 99.9478 | 99.9819 | 18.3860 | 193362 | 101 | 193356 | 35 | 26 | 74.2857 | |
jpowers-varprowl | SNP | ti | HG002complexvar | homalt | 99.7216 | 99.9488 | 99.4954 | 19.7390 | 193364 | 99 | 193412 | 981 | 709 | 72.2732 | |
bgallagher-sentieon | SNP | ti | HG002complexvar | homalt | 99.9695 | 99.9514 | 99.9876 | 18.3190 | 193369 | 94 | 193359 | 24 | 24 | 100.0000 | |
rpoplin-dv42 | SNP | ti | HG002complexvar | homalt | 99.9574 | 99.9530 | 99.9617 | 18.4113 | 193372 | 91 | 193367 | 74 | 72 | 97.2973 | |
raldana-dualsentieon | SNP | ti | HG002complexvar | homalt | 99.9811 | 99.9726 | 99.9897 | 18.3281 | 193410 | 53 | 193401 | 20 | 20 | 100.0000 | |
hfeng-pmm2 | SNP | ti | HG002complexvar | homalt | 99.9798 | 99.9757 | 99.9840 | 18.5051 | 193416 | 47 | 193407 | 31 | 31 | 100.0000 | |
hfeng-pmm3 | SNP | ti | HG002complexvar | homalt | 99.9848 | 99.9773 | 99.9922 | 18.4374 | 193419 | 44 | 193409 | 15 | 15 | 100.0000 | |
hfeng-pmm1 | SNP | ti | HG002complexvar | homalt | 99.9845 | 99.9798 | 99.9891 | 18.4732 | 193424 | 39 | 193416 | 21 | 21 | 100.0000 | |
bgallagher-sentieon | INDEL | * | * | het | 99.5620 | 99.6441 | 99.4801 | 60.4341 | 193442 | 691 | 193072 | 1009 | 623 | 61.7443 | |
dgrover-gatk | INDEL | * | * | het | 99.5990 | 99.6559 | 99.5422 | 61.2168 | 193465 | 668 | 193091 | 888 | 555 | 62.5000 | |
ckim-gatk | INDEL | * | * | het | 99.4669 | 99.6616 | 99.2730 | 62.2737 | 193476 | 657 | 193095 | 1414 | 578 | 40.8769 |