PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
85251-85300 / 86044 show all
ndellapenna-hhgaSNPtimap_siren*
99.5376
99.2028
99.8746
51.9628
995558009955712560
48.0000
ltrigg-rtg1SNPtimap_siren*
99.5060
99.2556
99.7576
49.1435
996077479960124238
15.7025
ghariani-varprowlSNPtimap_siren*
99.0024
99.3374
98.6698
59.6146
99690665996931344247
18.3780
jlack-gatkSNPtimap_siren*
98.3403
99.3782
97.3238
62.0115
99731624997162742240
8.7527
gduggal-bwafbSNPtimap_siren*
99.3101
99.3981
99.2222
57.2359
9975160499755782145
18.5422
egarrison-hhgaSNPtimap_siren*
99.6715
99.4669
99.8769
52.8764
998205359982112354
43.9024
ckim-dragenSNPtimap_siren*
99.0224
99.5177
98.5321
56.8522
99871484998801488162
10.8871
rpoplin-dv42SNPtimap_siren*
99.6562
99.5227
99.7902
53.3616
9987647999868210138
65.7143
hfeng-pmm1SNPtimap_siren*
99.7016
99.5376
99.8660
52.2018
998914649987813442
31.3433
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738
jli-customSNPtimap_siren*
99.6599
99.5825
99.7375
51.1882
999364199992926366
25.0951
dgrover-gatkSNPtimap_siren*
99.6765
99.6403
99.7128
55.1320
999943619997928868
23.6111
hfeng-pmm2SNPtimap_siren*
99.6860
99.6642
99.7079
54.6933
10001833710000329339
13.3106
bgallagher-sentieonSNPtimap_siren*
99.6181
99.6801
99.5561
54.0168
10003432110001944666
14.7982
hfeng-pmm3SNPtimap_siren*
99.7701
99.6881
99.8523
52.8057
10004231310002714825
16.8919
eyeh-varpipeSNPtimap_siren*
99.4355
99.7967
99.0768
57.9702
1001512049787491255
6.0307
ckim-isaacSNP*map_siren*
84.8645
73.7800
99.8686
51.5315
1078873834110790014241
28.8732
gduggal-snapplatINDELI1_5**
77.0401
71.8692
83.0128
69.8058
10828142383109381223831242
5.5489
ckim-vqsrSNP*map_siren*
85.1088
74.3093
99.5811
71.1680
1086613756710864145731
6.7834
mlin-fermikitSNP*map_siren*
83.3638
74.6157
94.4357
47.0930
1091093711910909464285503
85.6098
ghariani-varprowlINDEL**homalt
92.0100
87.3111
97.2434
45.5820
1092891588310918330952195
70.9208
jpowers-varprowlINDEL**homalt
92.2554
87.3566
97.7363
45.3284
1093461582610923325302235
88.3399
gduggal-bwavardINDEL**homalt
93.4187
87.7664
99.8491
40.7725
1098591531310921416592
55.7576
ciseli-customINDEL**homalt
84.6742
88.5829
81.0959
56.4739
110881142911106442579222639
87.7753
gduggal-bwaplatINDEL**homalt
94.8233
90.5786
99.4855
59.5744
11337911793113311586499
85.1536
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
ckim-isaacINDEL**homalt
96.2069
93.1918
99.4236
48.6128
1166508522116601676381
56.3609
gduggal-snapfbINDEL**homalt
94.4791
93.5105
95.4679
58.3050
117049812311709955593925
70.6062
anovak-vgINDEL**het
69.4961
61.0200
80.7068
58.0873
118460756731311723135716629
53.0312
gduggal-snapplatINDELD1_5**
84.8354
80.9636
89.0961
66.8161
11881027935139871171184621
26.9950
eyeh-varpipeINDEL**homalt
92.5348
96.0734
89.2476
55.4307
12025749151211091459114265
97.7657
gduggal-bwaplatSNP*map_siren*
90.0933
82.3317
99.4705
71.0074
12039225836120427641167
26.0530
mlin-fermikitINDEL**homalt
97.5803
98.1713
96.9963
56.8203
122883228912277438023715
97.7117
gduggal-bwafbINDEL**homalt
98.0353
98.2688
97.8029
56.6087
123005216712299127632706
97.9370
qzeng-customINDEL**homalt
98.3570
98.7793
97.9383
51.6092
123644152812365526031560
59.9308
ndellapenna-hhgaINDEL**homalt
98.8395
98.9790
98.7005
54.9139
123894127812387716311021
62.5996
egarrison-hhgaINDEL**homalt
98.9696
99.0301
98.9091
55.3233
12395812141239391367838
61.3021
rpoplin-dv42INDEL**homalt
99.5190
99.2498
99.7896
55.3247
124233939124240262239
91.2214
ltrigg-rtg2INDEL**homalt
99.5524
99.2554
99.8512
52.3128
124239932124115185162
87.5676
ltrigg-rtg1INDEL**homalt
99.6060
99.3824
99.8305
54.1259
124398773124268211185
87.6777
asubramanian-gatkINDEL**homalt
99.2686
99.5207
99.0178
58.9491
1245726001245991236954
77.1845
hfeng-pmm1INDEL**homalt
99.6836
99.7787
99.5886
55.4406
124895277124903516501
97.0930
cchapple-customINDEL**homalt
99.5578
99.7843
99.3323
55.6558
124902270124673838810
96.6587
jlack-gatkINDEL**homalt
99.2685
99.7907
98.7518
57.7386
12491026212492315791542
97.6567
hfeng-pmm3INDEL**homalt
99.7023
99.7971
99.6077
55.0410
124918254124928492475
96.5447
hfeng-pmm2INDEL**homalt
99.6594
99.8043
99.5149
55.8756
124927245124935609588
96.5517
ckim-dragenINDEL**homalt
99.2636
99.8234
98.7101
59.5235
12495122112488716321607
98.4681
jli-customINDEL**homalt
99.7041
99.8538
99.5548
57.2311
124989183124999559535
95.7066
ckim-vqsrINDEL**homalt
99.5675
99.8658
99.2711
58.9429
125004168125017918901
98.1481
jmaeng-gatkINDEL**homalt
99.5485
99.8690
99.2301
59.0290
125008164125021970941
97.0103