PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85201-85250 / 86044 show all | |||||||||||||||
hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9496 | 98.2541 | 99.6549 | 70.5915 | 92800 | 1649 | 92707 | 321 | 262 | 81.6199 | |
jlack-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3660 | 98.2626 | 98.4696 | 72.6251 | 92808 | 1641 | 92717 | 1441 | 1058 | 73.4212 | |
rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.4841 | 98.2647 | 98.7045 | 79.6128 | 92810 | 1639 | 92797 | 1218 | 1144 | 93.9245 | |
hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9345 | 98.2816 | 99.5962 | 71.4015 | 92826 | 1623 | 92734 | 376 | 307 | 81.6489 | |
cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7884 | 98.3155 | 99.2658 | 69.8244 | 92858 | 1591 | 106946 | 791 | 672 | 84.9558 | |
hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9724 | 98.3166 | 99.6370 | 70.9510 | 92859 | 1590 | 92766 | 338 | 265 | 78.4024 | |
anovak-vg | SNP | tv | HG002complexvar | homalt | 98.3199 | 97.7479 | 98.8987 | 22.7520 | 92969 | 2142 | 91242 | 1016 | 768 | 75.5906 | |
ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0121 | 98.4584 | 99.5720 | 70.6731 | 92993 | 1456 | 93299 | 401 | 200 | 49.8753 | |
jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.8577 | 98.4881 | 99.2301 | 73.8561 | 93021 | 1428 | 92930 | 721 | 622 | 86.2691 | |
ckim-vqsr | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9460 | 98.5791 | 99.3156 | 73.7970 | 93107 | 1342 | 93014 | 641 | 576 | 89.8596 | |
jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1076 | 98.6776 | 99.5414 | 71.9967 | 93200 | 1249 | 93118 | 429 | 358 | 83.4499 | |
ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9696 | 98.6829 | 99.2581 | 73.7654 | 93205 | 1244 | 93112 | 696 | 583 | 83.7644 | |
ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9722 | 98.8576 | 99.0871 | 73.7310 | 93370 | 1079 | 93240 | 859 | 756 | 88.0093 | |
bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0261 | 98.9285 | 99.1239 | 73.3821 | 93437 | 1012 | 93346 | 825 | 733 | 88.8485 | |
mlin-fermikit | SNP | tv | HG002complexvar | homalt | 98.2029 | 98.2799 | 98.1261 | 24.4893 | 93475 | 1636 | 93471 | 1785 | 1729 | 96.8627 | |
astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1675 | 99.0429 | 99.2924 | 73.5960 | 93545 | 904 | 93452 | 666 | 582 | 87.3874 | |
dgrover-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2043 | 99.1106 | 99.2981 | 73.8671 | 93609 | 840 | 93517 | 661 | 572 | 86.5356 | |
ckim-gatk | SNP | tv | HG002complexvar | homalt | 99.2138 | 98.4513 | 99.9883 | 23.0317 | 93638 | 1473 | 93624 | 11 | 8 | 72.7273 | |
jmaeng-gatk | SNP | tv | HG002complexvar | homalt | 99.2171 | 98.4618 | 99.9840 | 23.0284 | 93648 | 1463 | 93634 | 15 | 13 | 86.6667 | |
qzeng-custom | SNP | tv | HG002complexvar | homalt | 99.2146 | 98.6185 | 99.8179 | 23.3623 | 93797 | 1314 | 91543 | 167 | 141 | 84.4311 | |
ciseli-custom | SNP | tv | HG002complexvar | homalt | 95.4763 | 98.8182 | 92.3530 | 24.8215 | 93987 | 1124 | 92583 | 7666 | 2593 | 33.8247 | |
cchapple-custom | SNP | tv | HG002complexvar | homalt | 99.8120 | 99.6331 | 99.9915 | 20.8601 | 94762 | 349 | 94159 | 8 | 7 | 87.5000 | |
gduggal-snapfb | SNP | tv | HG002complexvar | homalt | 99.3543 | 99.6457 | 99.0647 | 24.8993 | 94774 | 337 | 94793 | 895 | 159 | 17.7654 | |
gduggal-bwafb | SNP | tv | HG002complexvar | homalt | 99.8685 | 99.7960 | 99.9410 | 22.9952 | 94917 | 194 | 94931 | 56 | 49 | 87.5000 | |
ndellapenna-hhga | SNP | tv | HG002complexvar | homalt | 99.8464 | 99.8065 | 99.8864 | 22.8760 | 94927 | 184 | 94935 | 108 | 97 | 89.8148 | |
egarrison-hhga | SNP | tv | HG002complexvar | homalt | 99.8748 | 99.8086 | 99.9410 | 22.7459 | 94929 | 182 | 94938 | 56 | 46 | 82.1429 | |
ltrigg-rtg1 | SNP | tv | HG002complexvar | homalt | 99.9101 | 99.8465 | 99.9737 | 22.5425 | 94965 | 146 | 95003 | 25 | 19 | 76.0000 | |
ltrigg-rtg2 | SNP | tv | HG002complexvar | homalt | 99.9174 | 99.8549 | 99.9800 | 22.4289 | 94973 | 138 | 95001 | 19 | 19 | 100.0000 | |
jlack-gatk | SNP | tv | HG002complexvar | homalt | 99.9385 | 99.8959 | 99.9811 | 22.6324 | 95012 | 99 | 94994 | 18 | 14 | 77.7778 | |
eyeh-varpipe | SNP | tv | HG002complexvar | homalt | 99.9220 | 99.9001 | 99.9440 | 20.4163 | 95016 | 95 | 89180 | 50 | 38 | 76.0000 | |
astatham-gatk | SNP | tv | HG002complexvar | homalt | 99.9458 | 99.9043 | 99.9874 | 22.8056 | 95020 | 91 | 95005 | 12 | 10 | 83.3333 | |
rpoplin-dv42 | SNP | tv | HG002complexvar | homalt | 99.9385 | 99.9201 | 99.9569 | 22.8530 | 95035 | 76 | 95011 | 41 | 37 | 90.2439 | |
jli-custom | SNP | tv | HG002complexvar | homalt | 99.9542 | 99.9254 | 99.9832 | 22.8543 | 95040 | 71 | 95029 | 16 | 11 | 68.7500 | |
ckim-dragen | SNP | tv | HG002complexvar | homalt | 99.9600 | 99.9306 | 99.9895 | 22.9484 | 95045 | 66 | 95148 | 10 | 10 | 100.0000 | |
ghariani-varprowl | SNP | tv | HG002complexvar | homalt | 99.3856 | 99.9338 | 98.8434 | 25.4168 | 95048 | 63 | 95121 | 1113 | 736 | 66.1276 | |
jpowers-varprowl | SNP | tv | HG002complexvar | homalt | 99.4724 | 99.9411 | 99.0081 | 25.6082 | 95055 | 56 | 95130 | 953 | 743 | 77.9643 | |
dgrover-gatk | SNP | tv | HG002complexvar | homalt | 99.9637 | 99.9411 | 99.9863 | 22.7977 | 95055 | 56 | 95040 | 13 | 11 | 84.6154 | |
bgallagher-sentieon | SNP | tv | HG002complexvar | homalt | 99.9663 | 99.9453 | 99.9874 | 22.7972 | 95059 | 52 | 95044 | 12 | 10 | 83.3333 | |
raldana-dualsentieon | SNP | tv | HG002complexvar | homalt | 99.9758 | 99.9632 | 99.9884 | 22.8157 | 95076 | 35 | 95070 | 11 | 9 | 81.8182 | |
hfeng-pmm3 | SNP | tv | HG002complexvar | homalt | 99.9769 | 99.9643 | 99.9895 | 22.8756 | 95077 | 34 | 95069 | 10 | 9 | 90.0000 | |
hfeng-pmm2 | SNP | tv | HG002complexvar | homalt | 99.9732 | 99.9664 | 99.9800 | 23.0303 | 95079 | 32 | 95074 | 19 | 13 | 68.4211 | |
hfeng-pmm1 | SNP | tv | HG002complexvar | homalt | 99.9763 | 99.9664 | 99.9863 | 22.9407 | 95079 | 32 | 95072 | 13 | 11 | 84.6154 | |
gduggal-snapplat | SNP | ti | map_siren | * | 97.1306 | 96.0829 | 98.2013 | 65.7243 | 96424 | 3931 | 96473 | 1767 | 855 | 48.3871 | |
gduggal-snapvard | SNP | ti | map_siren | * | 96.3076 | 96.1556 | 96.4600 | 63.8276 | 96497 | 3858 | 95534 | 3506 | 409 | 11.6657 | |
gduggal-bwavard | SNP | ti | map_siren | * | 97.1130 | 96.7157 | 97.5137 | 63.7053 | 97059 | 3296 | 96090 | 2450 | 278 | 11.3469 | |
gduggal-snapvard | INDEL | * | * | homalt | 86.7363 | 77.5779 | 98.3465 | 41.7135 | 97105 | 28066 | 99624 | 1675 | 1571 | 93.7910 | |
jpowers-varprowl | SNP | ti | map_siren | * | 98.7281 | 98.3847 | 99.0739 | 58.8371 | 98734 | 1621 | 98737 | 923 | 255 | 27.6273 | |
cchapple-custom | SNP | ti | map_siren | * | 98.4477 | 98.4784 | 98.4171 | 57.2072 | 98828 | 1527 | 98796 | 1589 | 367 | 23.0963 | |
gduggal-snapfb | SNP | ti | map_siren | * | 98.5881 | 98.6618 | 98.5145 | 58.3905 | 99012 | 1343 | 99014 | 1493 | 523 | 35.0301 | |
ltrigg-rtg2 | SNP | ti | map_siren | * | 99.4787 | 99.1669 | 99.7924 | 46.9044 | 99518 | 836 | 99513 | 207 | 30 | 14.4928 |