PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
85151-85200 / 86044 show all
jmaeng-gatkINDELD1_5*het
99.4941
99.6997
99.2893
60.9724
8731126387316625129
20.6400
rpoplin-dv42INDELD1_5*het
99.5696
99.7077
99.4320
57.4420
8731825687348499434
86.9739
jli-customINDELD1_5*het
99.7840
99.7088
99.8593
56.7542
873192558731312365
52.8455
ckim-dragenINDELD1_5*het
99.5957
99.7625
99.4294
59.4097
873662088730850164
12.7745
dgrover-gatkINDELD1_5*het
99.7614
99.7979
99.7250
59.4296
8739717787406241125
51.8672
bgallagher-sentieonINDELD1_5*het
99.7512
99.8059
99.6966
58.6998
8740417087413266136
51.1278
ckim-gatkINDELD1_5*het
99.6268
99.8162
99.4381
60.7761
8741316187419494126
25.5061
gduggal-snapplatSNP*map_sirenhet
96.5899
96.2777
96.9043
72.4626
8760433878771028021309
46.7166
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.2288
92.7559
93.7066
80.9569
8760768428825159275106
86.1481
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.2879
92.8692
93.7104
80.9504
8771467358818959195201
87.8696
gduggal-snapvardSNP*map_sirenhet
95.1967
96.5469
93.8838
69.6200
878493142867435651524
9.2727
gduggal-bwavardSNP*map_sirenhet
96.2598
97.0810
95.4524
69.7950
883352656872334156368
8.8547
gduggal-bwafbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.5779
93.7628
97.4647
70.7003
8855858919453124592226
90.5246
jpowers-varprowlSNP*map_sirenhet
98.0429
97.8328
98.2539
63.2948
890191972890211582312
19.7219
astatham-gatkSNPtimap_siren*
94.0656
88.8705
99.9059
56.9785
8918611169891718446
54.7619
ciseli-customSNPtimap_siren*
90.7989
89.0429
92.6255
57.4504
89359109968907770922003
28.2431
cchapple-customSNP*map_sirenhet
97.7546
98.5944
96.9290
63.2688
897121279898262846543
19.0794
ltrigg-rtg2SNP*map_sirenhet
99.2163
98.7812
99.6552
46.0328
8988111098988731115
4.8232
gduggal-snapfbSNP*map_sirenhet
98.1134
98.8438
97.3936
60.3479
899391052899422407760
31.5746
ndellapenna-hhgaSNP*map_sirenhet
99.3524
98.8878
99.8214
53.1990
8997910128998016158
36.0248
ltrigg-rtg1SNP*map_sirenhet
99.2561
98.9032
99.6115
48.6936
899929988999635116
4.5584
egarrison-hhgaSNP*map_sirenhet
99.5365
99.2384
99.8364
54.0342
902986939029914853
35.8108
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.6668
95.6114
95.7223
68.1753
90304414514827166263965
59.8400
gduggal-bwafbSNP*map_sirenhet
98.9549
99.3230
98.5895
60.8677
90375616903791293200
15.4679
hfeng-pmm1SNP*map_sirenhet
99.5907
99.3571
99.8255
53.5727
904065859039215838
24.0506
ghariani-varprowlSNP*map_sirenhet
98.3861
99.3911
97.4013
64.9618
90437554904402413303
12.5570
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
raldana-dualsentieonSNP*map_sirenhet
99.3673
99.4219
99.3127
56.6962
904655269045162610
1.5974
jlack-gatkSNP*map_sirenhet
97.0812
99.4593
94.8142
68.9379
90499492904854949324
6.5468
jli-customSNP*map_sirenhet
99.5222
99.4681
99.5764
53.8949
905074849050138576
19.7403
ckim-dragenSNP*map_sirenhet
98.5668
99.4945
97.6562
62.5377
90531460905412173189
8.6977
hfeng-pmm2SNP*map_sirenhet
99.5406
99.5406
99.5405
57.6094
905734189055941833
7.8947
hfeng-pmm3SNP*map_sirenhet
99.6837
99.5824
99.7852
54.5786
906113809059719518
9.2308
asubramanian-gatkSNP*map_siren*
76.4845
61.9738
99.8677
70.7590
90623556059060512035
29.1667
dgrover-gatkSNP*map_sirenhet
99.5699
99.6197
99.5201
59.7603
906453469063143777
17.6201
bgallagher-sentieonSNP*map_sirenhet
99.4455
99.6483
99.2436
58.2943
906713209065769177
11.1433
anovak-vgSNPtimap_siren*
88.3716
90.3532
86.4749
58.5181
90674968189812140473559
25.3364
eyeh-varpipeSNP*map_sirenhet
98.0835
99.7637
96.4589
61.2396
9077621587713322051
1.5839
jmaeng-gatkSNPtimap_siren*
94.5677
90.5256
98.9876
65.0046
9084795089083292992
9.9031
ckim-gatkSNPtimap_siren*
94.6168
90.5675
99.0452
64.7326
9088994669087487696
10.9589
gduggal-bwaplatSNPtvHG002complexvarhomalt
97.7875
95.7534
99.9100
24.5806
910724039909998277
93.9024
asubramanian-gatkSNPtvHG002complexvarhomalt
97.9093
95.9142
99.9890
23.2773
91225388691211108
80.0000
ckim-vqsrSNPtvHG002complexvarhomalt
98.0771
96.2349
99.9913
23.4384
9153035819151686
75.0000
gduggal-snapvardSNPtvHG002complexvarhomalt
98.0989
96.4652
99.7889
20.7946
9174933628934818993
49.2063
gduggal-snapplatINDEL**homalt
81.6385
73.6219
91.6144
63.4553
92154330189939790983079
33.8426
gduggal-bwavardSNPtvHG002complexvarhomalt
98.3914
96.9047
99.9244
20.9085
921672944899126835
51.4706
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6899
97.7438
99.6546
70.7311
92318213192612321168
52.3364
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6413
97.9883
99.3029
72.0487
92549190092457649588
90.6009
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2746
98.1228
98.4270
77.7694
926761773961101536892
58.0729
gduggal-snapplatSNPtvHG002complexvarhomalt
98.5607
97.4503
99.6966
24.7080
92686242592657282135
47.8723