PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84901-84950 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.1638 | 96.5250 | 97.8111 | 70.9066 | 62192 | 2239 | 63408 | 1419 | 1076 | 75.8280 | |
| eyeh-varpipe | SNP | ti | map_siren | het | 99.1597 | 99.7515 | 98.5748 | 60.2517 | 62227 | 155 | 60657 | 877 | 34 | 3.8769 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7831 | 96.8990 | 98.6834 | 73.3610 | 62433 | 1998 | 63262 | 844 | 717 | 84.9526 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3301 | 95.6145 | 99.1085 | 62.8544 | 62485 | 2866 | 62808 | 565 | 237 | 41.9469 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3301 | 95.6145 | 99.1085 | 62.8544 | 62485 | 2866 | 62808 | 565 | 237 | 41.9469 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3740 | 96.2418 | 98.5331 | 64.4408 | 62895 | 2456 | 62671 | 933 | 862 | 92.3901 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3740 | 96.2418 | 98.5331 | 64.4408 | 62895 | 2456 | 62671 | 933 | 862 | 92.3901 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.7786 | 96.2480 | 97.3151 | 87.4466 | 62899 | 2452 | 62814 | 1733 | 1611 | 92.9602 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.7786 | 96.2480 | 97.3151 | 87.4466 | 62899 | 2452 | 62814 | 1733 | 1611 | 92.9602 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.8694 | 96.4285 | 97.3143 | 66.9705 | 63017 | 2334 | 62795 | 1733 | 1467 | 84.6509 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.8694 | 96.4285 | 97.3143 | 66.9705 | 63017 | 2334 | 62795 | 1733 | 1467 | 84.6509 | |
| astatham-gatk | SNP | * | map_l100_m2_e0 | * | 91.9897 | 85.2942 | 99.8259 | 70.5601 | 63087 | 10877 | 63076 | 110 | 52 | 47.2727 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9085 | 96.6244 | 99.2272 | 64.2470 | 63145 | 2206 | 62918 | 490 | 402 | 82.0408 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9085 | 96.6244 | 99.2272 | 64.2470 | 63145 | 2206 | 62918 | 490 | 402 | 82.0408 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.9134 | 96.6320 | 97.1965 | 74.4490 | 63150 | 2201 | 65872 | 1900 | 1174 | 61.7895 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.9134 | 96.6320 | 97.1965 | 74.4490 | 63150 | 2201 | 65872 | 1900 | 1174 | 61.7895 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7746 | 96.6611 | 98.9141 | 61.8918 | 63169 | 2182 | 63489 | 697 | 270 | 38.7374 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7746 | 96.6611 | 98.9141 | 61.8918 | 63169 | 2182 | 63489 | 697 | 270 | 38.7374 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9182 | 98.0817 | 99.7690 | 70.7759 | 63195 | 1236 | 63064 | 146 | 87 | 59.5890 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6609 | 96.7085 | 98.6322 | 60.0245 | 63200 | 2151 | 78454 | 1088 | 926 | 85.1103 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6609 | 96.7085 | 98.6322 | 60.0245 | 63200 | 2151 | 78454 | 1088 | 926 | 85.1103 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9439 | 96.7636 | 99.1534 | 64.2879 | 63236 | 2115 | 63011 | 538 | 416 | 77.3234 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9439 | 96.7636 | 99.1534 | 64.2879 | 63236 | 2115 | 63011 | 538 | 416 | 77.3234 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9428 | 98.4681 | 99.4221 | 74.5651 | 63444 | 987 | 63485 | 369 | 305 | 82.6558 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0349 | 98.5054 | 99.5702 | 72.8907 | 63468 | 963 | 63480 | 274 | 249 | 90.8759 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.8272 | 98.5395 | 99.1166 | 73.0877 | 63490 | 941 | 63503 | 566 | 450 | 79.5053 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1846 | 98.5457 | 99.8318 | 70.9620 | 63494 | 937 | 63506 | 107 | 86 | 80.3738 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7771 | 97.1844 | 98.3771 | 67.7791 | 63511 | 1840 | 63286 | 1044 | 906 | 86.7816 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7771 | 97.1844 | 98.3771 | 67.7791 | 63511 | 1840 | 63286 | 1044 | 906 | 86.7816 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1803 | 98.5845 | 99.7833 | 71.8915 | 63519 | 912 | 63530 | 138 | 117 | 84.7826 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1973 | 98.5845 | 99.8177 | 71.4580 | 63519 | 912 | 63531 | 116 | 89 | 76.7241 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1034 | 98.6295 | 99.5819 | 70.6519 | 63548 | 883 | 64304 | 270 | 244 | 90.3704 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2575 | 98.7987 | 99.7206 | 70.8721 | 63657 | 774 | 63532 | 178 | 101 | 56.7416 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2520 | 97.4920 | 99.0239 | 63.2840 | 63712 | 1639 | 63508 | 626 | 529 | 84.5048 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2520 | 97.4920 | 99.0239 | 63.2840 | 63712 | 1639 | 63508 | 626 | 529 | 84.5048 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0302 | 97.5303 | 98.5353 | 67.8515 | 63737 | 1614 | 63506 | 944 | 836 | 88.5593 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0302 | 97.5303 | 98.5353 | 67.8515 | 63737 | 1614 | 63506 | 944 | 836 | 88.5593 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2241 | 98.9337 | 99.5161 | 74.5848 | 63744 | 687 | 63757 | 310 | 273 | 88.0645 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0945 | 98.9337 | 99.2558 | 72.1244 | 63744 | 687 | 63755 | 478 | 442 | 92.4686 | |
| astatham-gatk | SNP | * | map_l100_m2_e1 | * | 92.0052 | 85.3219 | 99.8246 | 70.5612 | 63767 | 10970 | 63756 | 112 | 52 | 46.4286 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2755 | 98.9912 | 99.5615 | 74.4850 | 63781 | 650 | 63794 | 281 | 255 | 90.7473 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0533 | 97.6374 | 98.4728 | 67.8136 | 63807 | 1544 | 63576 | 986 | 844 | 85.5984 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0533 | 97.6374 | 98.4728 | 67.8136 | 63807 | 1544 | 63576 | 986 | 844 | 85.5984 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2418 | 99.0470 | 99.4374 | 74.2668 | 63817 | 614 | 63806 | 361 | 326 | 90.3047 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3055 | 99.0812 | 99.5308 | 74.4619 | 63839 | 592 | 63852 | 301 | 259 | 86.0465 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2748 | 99.1091 | 99.4411 | 74.0482 | 63857 | 574 | 63870 | 359 | 327 | 91.0864 | |