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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
84751-84800 / 86044 show all
gduggal-bwavardSNP*map_sirenhomalt
98.4056
96.9468
99.9088
52.1457
534721684526084840
83.3333
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.4680
83.0514
78.0406
69.2847
5351010920631201776115073
84.8657
ciseli-customSNPtimap_sirenhet
88.8574
85.8902
92.0370
60.6835
535808802534684626118
2.5508
ciseli-customINDELI1_5*homalt
89.1001
89.2384
88.9622
46.9528
5392565035367866606265
94.0691
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1202
97.0035
95.2529
60.1354
5396416675524027531338
48.6015
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.3922
97.0358
90.0123
67.8126
539821649533805923338
5.7066
qzeng-customSNPtimap_sirenhet
92.2591
86.5538
98.7696
67.2335
53994838853703669449
67.1151
ciseli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.8947
97.3720
81.7754
63.9228
5416914625435212113797
6.5797
cchapple-customSNP*map_sirenhomalt
99.1241
98.2758
99.9871
48.6990
542059515417377
100.0000
gduggal-bwavardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5998
97.4834
97.7164
62.9555
542311400536171253392
31.2849
gduggal-snapfbSNP*map_sirenhomalt
99.0661
98.3701
99.7720
60.7462
542578995425712441
33.0645
mlin-fermikitSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9901
97.8124
98.1685
60.1939
544141217544571016736
72.4409
gduggal-bwaplatSNPtimap_sirenhet
92.8447
87.2527
99.2026
72.7353
54430795254492438111
25.3425
anovak-vgINDEL*HG002complexvar*
72.8155
71.0364
74.6860
53.4026
5465422284560691900416560
87.1395
jlack-gatkSNP*map_sirenhomalt
99.6008
99.2857
99.9179
50.5286
54762394547534530
66.6667
gduggal-snapplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
67.1528
57.9879
79.7584
80.2389
547693968061674156524576
29.2359
ghariani-varprowlSNP*map_sirenhomalt
99.5027
99.3944
99.6112
54.3239
5482233454823214127
59.3458
jpowers-varprowlSNP*map_sirenhomalt
99.5443
99.4144
99.6746
55.8957
5483332354834179129
72.0670
gduggal-bwavardINDELI1_5*homalt
95.1435
90.7626
99.9687
33.2973
548465582543431711
64.7059
gduggal-bwafbSNP*map_sirenhomalt
99.7102
99.5014
99.9199
54.2074
54881275548814425
56.8182
ckim-dragenSNP*map_sirenhomalt
99.7220
99.5214
99.9236
48.9049
54892264548964238
90.4762
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
jpowers-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8391
98.7777
96.9182
66.3842
54951680551301753575
32.8009
dgrover-gatkSNP*map_sirenhomalt
99.8121
99.6791
99.9455
50.4067
54979177549703026
86.6667
rpoplin-dv42SNP*map_sirenhomalt
99.7831
99.6882
99.8783
53.6066
54984172549836763
94.0299
ndellapenna-hhgaSNP*map_sirenhomalt
99.8258
99.7135
99.9382
52.6378
54998158549993430
88.2353
hfeng-pmm2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3785
98.8765
99.8856
58.5898
55006625549966310
15.8730
jli-customSNP*map_sirenhomalt
99.8512
99.7462
99.9564
49.8643
55016140550102424
100.0000
ltrigg-rtg2SNP*map_sirenhomalt
99.8557
99.7571
99.9546
50.5157
55022134550102522
88.0000
bgallagher-sentieonSNP*map_sirenhomalt
99.8557
99.7643
99.9473
50.0857
55026130550172925
86.2069
egarrison-hhgaSNP*map_sirenhomalt
99.8639
99.7770
99.9510
53.4112
55033123550332724
88.8889
asubramanian-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6773
98.9323
98.4237
61.2579
550375945507288234
3.8549
ltrigg-rtg1SNP*map_sirenhomalt
99.8648
99.7933
99.9364
52.2080
55042114550313531
88.5714
hfeng-pmm1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4409
98.9502
99.9364
58.3709
55047584550373512
34.2857
raldana-dualsentieonSNP*map_sirenhomalt
99.8920
99.8187
99.9655
49.6673
55056100550471919
100.0000
raldana-dualsentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3531
98.9700
99.7391
58.7473
550585735504814422
15.2778
hfeng-pmm3SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4564
98.9898
99.9274
58.6346
55069562550604015
37.5000
ghariani-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.4136
99.0024
92.0759
67.6063
55076555552874758565
11.8747
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4718
99.0131
99.9347
60.3688
55082549550723619
52.7778
ndellapenna-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3149
99.0149
99.6167
57.6636
5508354855098212134
63.2075
eyeh-varpipeSNP*map_sirenhomalt
99.8931
99.8749
99.9112
54.6593
5508769529054725
53.1915
hfeng-pmm1SNP*map_sirenhomalt
99.8994
99.8803
99.9184
53.4037
5509066550844526
57.7778
hfeng-pmm3SNP*map_sirenhomalt
99.9057
99.8840
99.9274
53.2388
5509264550834022
55.0000
gduggal-snapfbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.4732
99.0329
79.9484
69.7226
550935385547713914538
3.8666
hfeng-pmm2SNP*map_sirenhomalt
99.9075
99.9003
99.9148
53.4382
5510155550924729
61.7021
egarrison-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4287
99.1605
99.6983
57.8100
551644675518016788
52.6946
gduggal-bwafbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.5852
99.2612
97.9184
64.7490
55220411553201176260
22.1088
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4494
99.3637
99.5353
61.3550
552773545526625827
10.4651
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0366
99.3834
98.6923
64.9734
5528834355243732105
14.3443
ghariani-varprowlINDELI1_5*homalt
94.4302
91.5834
97.4597
39.6857
553425086552841441928
64.3997