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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1691 1692 1693 1694 1695 1696 1697 1698 1699 ... 1720 1721 » 84701-84750 / 86044 show all
eyeh-varpipe	SNP	ti	map_l100_m2_e0	*	99.3504	99.7181	98.9854	68.9913	48823	138	47903	491	32	6.5173
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	*	99.2480	98.6784	99.8242	55.9018	48831	654	48833	86	19	22.0930
cchapple-custom	INDEL	D1_5	*	homalt	99.7503	99.8385	99.6622	57.7109	48847	79	48389	164	151	92.0732
hfeng-pmm2	INDEL	D1_5	*	homalt	99.8457	99.8467	99.8447	59.0004	48851	75	48855	76	74	97.3684
hfeng-pmm1	INDEL	D1_5	*	homalt	99.8651	99.8549	99.8753	58.6796	48855	71	48859	61	60	98.3607
jlack-gatk	INDEL	D1_5	*	homalt	99.6645	99.8651	99.4647	59.9060	48860	66	48867	263	260	98.8593
hfeng-pmm3	INDEL	D1_5	*	homalt	99.8825	99.8835	99.8815	58.1721	48869	57	48874	58	56	96.5517
ckim-dragen	INDEL	D1_5	*	homalt	99.6542	99.8998	99.4098	63.4062	48877	49	48847	290	286	98.6207
ckim-vqsr	INDEL	D1_5	*	homalt	99.7969	99.9203	99.6738	62.4858	48887	39	48894	160	157	98.1250
jmaeng-gatk	INDEL	D1_5	*	homalt	99.7928	99.9285	99.6576	62.5365	48891	35	48898	168	166	98.8095
ckim-gatk	INDEL	D1_5	*	homalt	99.8051	99.9366	99.6739	62.4819	48895	31	48902	160	157	98.1250
jli-custom	INDEL	D1_5	*	homalt	99.8764	99.9428	99.8102	61.2620	48898	28	48904	93	90	96.7742
astatham-gatk	INDEL	D1_5	*	homalt	99.8143	99.9448	99.6841	62.4034	48899	27	48904	155	152	98.0645
raldana-dualsentieon	INDEL	D1_5	*	homalt	99.7919	99.9448	99.6394	61.4897	48899	27	48904	177	175	98.8701
dgrover-gatk	INDEL	D1_5	*	homalt	99.8204	99.9489	99.6922	62.5668	48901	25	48906	151	149	98.6755
bgallagher-sentieon	INDEL	D1_5	*	homalt	99.7512	99.9530	99.5502	62.3527	48903	23	48908	221	219	99.0950
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	*	99.3168	98.8481	99.7899	59.0336	48915	570	48917	103	29	28.1553
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	*	99.3624	98.8906	99.8388	63.3822	48936	549	48938	79	40	50.6329
ghariani-varprowl	SNP	ti	map_l100_m2_e1	*	98.6004	99.0118	98.1924	70.8832	48996	489	48998	902	186	20.6208
jlack-gatk	SNP	ti	map_l100_m2_e1	*	97.5095	99.1108	95.9591	74.4631	49045	440	49038	2065	195	9.4431
gduggal-bwafb	SNP	ti	map_l100_m2_e1	*	99.1089	99.1189	99.0989	68.4487	49049	436	49051	446	108	24.2152
egarrison-hhga	SNP	ti	map_l100_m2_e1	*	99.5683	99.2846	99.8537	64.5157	49131	354	49132	72	32	44.4444
rpoplin-dv42	SNP	ti	map_l100_m2_e1	*	99.4666	99.2947	99.6390	64.7230	49136	349	49129	178	121	67.9775
ckim-dragen	SNP	ti	map_l100_m2_e1	*	98.6777	99.2968	98.0664	68.9837	49137	348	49145	969	108	11.1455
jli-custom	SNP	ti	map_l100_m2_e1	*	99.5011	99.3412	99.6614	62.5257	49159	326	49157	167	50	29.9401
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	*	99.3433	99.3594	99.3272	64.7652	49168	317	49161	333	19	5.7057
hfeng-pmm1	SNP	ti	map_l100_m2_e1	*	99.5757	99.3634	99.7889	64.0077	49170	315	49163	104	32	30.7692
anovak-vg	SNP	*	map_siren	homalt	93.9262	89.1653	99.2241	49.9600	49180	5976	48469	379	316	83.3773
ckim-isaac	SNP	ti	map_siren	het	88.1134	78.8433	99.8538	52.2793	49184	13198	49191	72	6	8.3333
dgrover-gatk	SNP	ti	map_l100_m2_e1	*	99.5279	99.4766	99.5792	67.5880	49226	259	49219	208	50	24.0385
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	*	99.4649	99.5494	99.3806	66.3075	49262	223	49255	307	50	16.2866
hfeng-pmm2	SNP	ti	map_l100_m2_e1	*	99.5423	99.5494	99.5352	66.9275	49262	223	49255	230	30	13.0435
hfeng-pmm3	SNP	ti	map_l100_m2_e1	*	99.6774	99.5898	99.7651	64.5884	49282	203	49275	116	21	18.1034
eyeh-varpipe	SNP	ti	map_l100_m2_e1	*	99.3531	99.7211	98.9878	69.0049	49347	138	48410	495	32	6.4647
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	79.5775	77.4363	81.8404	75.0483	49893	14538	49840	11059	10522	95.1442
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	80.9251	78.3877	83.6323	72.4014	50506	13925	50171	9819	9240	94.1033
gduggal-bwaplat	SNP	*	map_l100_m1_e0	*	82.4562	70.4418	99.4115	81.1732	51002	21401	51014	302	83	27.4834
ciseli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	79.4183	79.5592	79.2778	75.7467	51260	13170	51089	13354	8419	63.0448
astatham-gatk	SNP	ti	map_siren	het	90.2825	82.3747	99.8698	61.4644	51387	10995	51378	67	30	44.7761
anovak-vg	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	81.5683	79.9506	83.2528	70.9561	51513	12918	52192	10499	7538	71.7973
ciseli-custom	SNP	*	map_siren	homalt	93.3935	93.4404	93.3467	52.8475	51538	3618	51210	3650	2749	75.3151
gduggal-snapplat	INDEL	*	HG002complexvar	*	75.2674	67.2243	85.4968	64.1998	51721	25217	55926	9487	1463	15.4211
gduggal-bwaplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	88.4632	80.3154	98.4508	79.5350	51748	12683	51729	814	499	61.3022
gduggal-snapvard	INDEL	I1_5	*	homalt	92.2555	85.9022	99.6235	34.4127	51909	8519	51074	193	178	92.2280
ckim-vqsr	SNP	ti	map_siren	het	91.0834	83.9713	99.5117	71.3937	52383	9999	52376	257	20	7.7821
gduggal-snapplat	SNP	*	map_siren	homalt	97.4154	95.0214	99.9332	54.3867	52410	2746	52361	35	23	65.7143
ckim-isaac	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.5147	94.2784	98.8597	54.0704	52448	3183	52797	609	355	58.2923
gduggal-bwaplat	SNP	*	map_l100_m2_e0	*	82.8217	70.9791	99.4075	82.3292	52499	21465	52511	313	86	27.4760
gduggal-snapvard	SNP	*	map_siren	homalt	98.0593	96.3449	99.8358	52.8740	53140	2016	52295	86	67	77.9070
gduggal-bwaplat	SNP	*	map_l100_m2_e1	*	82.9577	71.1789	99.4078	82.2985	53197	21540	53209	317	87	27.4448

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