PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
84351-84400 / 86044 show all
jpowers-varprowlINDEL*HG002complexvarhet
92.4718
94.5577
90.4760
57.5873
4369725154368045984462
97.0422
gduggal-snapplatSNPtvmap_siren*
96.3584
95.1687
97.5782
71.5667
437112219437171085492
45.3456
jpowers-varprowlINDELD1_5*homalt
93.6510
89.4228
98.2990
49.9719
43751517543688756634
83.8624
ghariani-varprowlINDELD1_5*homalt
93.4710
89.4248
97.9006
50.1151
43752517443695937631
67.3426
gduggal-snapvardSNP*map_l125_m1_e0*
93.5846
96.5275
90.8158
77.9328
437531574431824367333
7.6254
mlin-fermikitINDEL*HG002complexvarhet
95.8810
94.8801
96.9032
52.4432
4384623664340113871299
93.6554
anovak-vgSNPtimap_l100_m2_e1*
84.6108
88.6390
80.9329
70.4744
43863562243482102442310
22.5498
gduggal-snapvardSNP*map_l100_m1_e0het
93.2304
96.7393
89.9672
77.3983
438801479433124830369
7.6398
gduggal-snapfbSNP*map_l125_m1_e0*
96.8640
96.8959
96.8321
72.7854
439201407439241437620
43.1454
cchapple-customSNP*map_l125_m1_e0*
96.8884
97.0680
96.7095
73.1758
439981329439981497343
22.9125
jpowers-varprowlSNP*map_l125_m1_e0*
97.5600
97.1209
98.0031
75.2469
44022130544022897282
31.4381
jpowers-varprowlSNP*map_l100_m1_e0het
97.3402
97.0590
97.6230
72.4758
440251334440271072263
24.5336
gduggal-snapplatSNP*map_l100_m2_e0het
95.2448
95.0839
95.4062
81.1675
4411822814415421261062
49.9530
gduggal-bwavardSNP*map_l100_m1_e0het
95.2191
97.5462
93.0004
78.0483
442461113436863288213
6.4781
gduggal-bwavardSNP*map_l125_m1_e0*
95.6870
97.6989
93.7563
78.5243
442841043437122911180
6.1834
gduggal-bwaplatINDELD1_5*homalt
94.9240
90.7227
99.5332
62.2451
44387453944353208178
85.5769
cchapple-customSNP*map_l100_m1_e0het
96.8285
97.8593
95.8192
72.2809
44388971444401939401
20.6808
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6076
97.1467
98.0729
73.4952
4439813044442887338
4.3528
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6076
97.1467
98.0729
73.4952
4439813044442887338
4.3528
gduggal-bwavardINDELD1_5*homalt
95.1427
90.8106
99.9088
44.5205
444304496438264027
67.5000
ltrigg-rtg2SNP*map_l100_m1_e0het
98.8659
98.0136
99.7330
50.5607
44458901444561198
6.7227
mlin-fermikitSNP*map_sirenhomalt
84.4526
80.6077
88.6825
45.6664
44460106964445356735485
96.6861
ltrigg-rtg2SNP*map_l125_m1_e0*
98.9740
98.1071
99.8563
58.5564
44469858444706415
23.4375
gduggal-snapvardSNPtvmap_siren*
95.8840
96.8735
94.9146
68.0322
444941436442712372211
8.8955
gduggal-snapfbSNP*map_l100_m1_e0het
97.2532
98.1503
96.3723
66.8525
44520839445241676659
39.3198
ltrigg-rtg1SNP*map_l100_m1_e0het
98.9962
98.2804
99.7226
54.6285
445797804457612412
9.6774
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.6453
92.3929
68.4589
73.0930
445993672447162060220414
99.0875
gduggal-snapplatSNP*map_l100_m2_e1het
95.2787
95.1235
95.4344
81.1824
4461122874464921361068
50.0000
ltrigg-rtg1SNP*map_l125_m1_e0*
99.1092
98.4292
99.7987
62.1857
44615712446169028
31.1111
ndellapenna-hhgaSNP*map_l100_m1_e0het
99.0732
98.3928
99.7631
62.7556
446307294463210641
38.6792
ndellapenna-hhgaSNP*map_l125_m1_e0*
99.1686
98.5527
99.7922
67.5463
44671656446719349
52.6882
ghariani-varprowlSNP*map_l125_m1_e0*
97.9382
98.7204
97.1684
75.3206
44747580447471304273
20.9356
gduggal-bwavardSNPtvmap_siren*
96.6959
97.4309
95.9719
67.9885
447501180445301869157
8.4002
gduggal-bwafbSNP*map_l125_m1_e0*
98.8277
98.8550
98.8005
72.4101
4480851944808544134
24.6324
jlack-gatkSNP*map_l125_m1_e0*
96.1255
98.8638
93.5349
78.9418
44812515448063097238
7.6849
ndellapenna-hhgaINDEL*HG002complexvarhet
97.4850
96.9835
97.9917
54.0711
44818139444840919671
73.0141
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
mlin-fermikitSNP*map_l100_m2_e0*
72.7370
60.6281
90.8897
55.5979
44843291214483544943956
88.0285
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.8037
98.1533
89.8233
81.9505
44858844449975098525
10.2982
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.8037
98.1533
89.8233
81.9505
44858844449975098525
10.2982
egarrison-hhgaSNP*map_l100_m1_e0het
99.3656
98.9352
99.7999
63.8790
44876483448779031
34.4444
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
76.9680
69.6854
85.9503
79.9286
44899195325206785113951
46.4223
rpoplin-dv42SNP*map_l125_m1_e0*
99.2363
99.0558
99.4176
68.8661
4489942844893263168
63.8783
gduggal-snapvardSNP*map_l100_m2_e0het
93.3360
96.7693
90.1379
78.6381
449001499443194849371
7.6511
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
egarrison-hhgaSNP*map_l125_m1_e0*
99.4419
99.0690
99.8177
68.7095
44905422449058241
50.0000
gduggal-bwafbSNP*map_l100_m1_e0het
98.6881
99.0035
98.3746
69.4458
4490745244909742142
19.1375
jli-customSNP*map_l125_m1_e0*
99.3178
99.0844
99.5522
66.7512
449124154490920267
33.1683