PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
83751-83800 / 86044 show all
rpoplin-dv42SNP*map_l150_m1_e0*
99.0457
98.8533
99.2389
73.2840
3025835130252232150
64.6552
ckim-dragenSNP*map_l150_m1_e0*
98.2024
98.8631
97.5505
76.7332
302613483026776093
12.2368
egarrison-hhgaSNP*map_l150_m1_e0*
99.3388
98.9023
99.7792
73.2772
30273336302736732
47.7612
cchapple-customSNPtimap_l100_m2_e1het
97.1612
97.8036
96.5271
73.0715
30280680302961090274
25.1376
gduggal-snapplatINDEL*HG002complexvarhet
73.0648
65.5393
82.5428
64.5149
3028715925329426967459
6.5882
rpoplin-dv42SNPtimap_l125_m2_e1*
99.3100
99.1069
99.5138
70.8133
3029627330292148102
68.9189
egarrison-hhgaSNPtimap_l125_m2_e1*
99.4698
99.1135
99.8287
70.7805
30298271302985224
46.1538
raldana-dualsentieonSNP*map_l150_m1_e0*
98.9484
98.9905
98.9063
73.9052
303003093029433511
3.2836
jpowers-varprowlINDELI1_5HG002complexvar*
92.7158
90.8192
94.6934
52.3150
3030030633017516911600
94.6186
ckim-dragenSNPtimap_l125_m2_e1*
98.4185
99.1233
97.7236
74.4858
303012683030870681
11.4731
jli-customSNPtimap_l125_m2_e1*
99.3704
99.1266
99.6153
68.7864
303022673030011741
35.0427
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7280
96.4818
99.0068
57.7386
30303110530303304291
95.7237
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7280
96.4818
99.0068
57.7386
30303110530303304291
95.7237
egarrison-hhgaSNPtimap_l100_m2_e0het
99.3933
98.9779
99.8123
65.4669
30309313303105718
31.5789
gduggal-bwafbSNPtimap_l100_m2_e0het
98.8152
98.9975
98.6336
70.5993
303153073031742095
22.6190
raldana-dualsentieonSNPtimap_l125_m2_e1*
99.1254
99.1822
99.0686
71.0811
303192503031528511
3.8597
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0742
96.5582
99.6386
56.1134
3032710813032811094
85.4545
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0742
96.5582
99.6386
56.1134
3032710813032811094
85.4545
hfeng-pmm1SNPtimap_l125_m2_e1*
99.4622
99.2247
99.7008
70.5014
30332237303289125
27.4725
hfeng-pmm1SNP*map_l150_m1_e0*
99.3336
99.1016
99.5666
73.6726
303342753032813237
28.0303
hfeng-pmm1SNPtimap_l100_m2_e0het
99.3987
99.0660
99.7336
64.8032
30336286303298120
24.6914
ghariani-varprowlSNPtimap_l100_m2_e0het
98.1558
99.0660
97.2621
74.0240
3033628630338854157
18.3841
dgrover-gatkSNP*map_l150_m1_e0*
99.1521
99.1473
99.1569
77.1188
303482613034225859
22.8682
raldana-dualsentieonSNPtimap_l100_m2_e0het
99.0553
99.1379
98.9728
67.5282
30358264303513156
1.9048
jli-customSNPtimap_l100_m2_e0het
99.3179
99.1411
99.4953
64.3096
303592633035715438
24.6753
rpoplin-dv42SNPtimap_l100_m2_e0het
99.3487
99.1444
99.5539
65.6465
303602623035213682
60.2941
gduggal-snapfbSNPtimap_l100_m2_e1het
97.4111
98.0685
96.7625
68.1401
30362598303661016436
42.9134
dgrover-gatkSNPtimap_l125_m2_e1*
99.3781
99.3327
99.4236
73.9461
303652043036117642
23.8636
ltrigg-rtg2SNPtimap_l100_m2_e1het
98.9153
98.0846
99.7602
53.1134
3036759330370736
8.2192
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0894
96.6856
99.5346
57.0832
30367104130368142126
88.7324
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0894
96.6856
99.5346
57.0832
30367104130368142126
88.7324
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
jlack-gatkSNPtimap_l100_m2_e0het
96.4036
99.2424
93.7226
78.7202
30390232303832035176
8.6487
ckim-dragenSNPtimap_l100_m2_e0het
98.1149
99.2554
97.0004
73.1660
303942283039794087
9.2553
bgallagher-sentieonSNPtimap_l125_m2_e1*
99.3333
99.4373
99.2295
72.6907
303971723039323642
17.7966
bgallagher-sentieonSNP*map_l150_m1_e0*
99.1019
99.3303
98.8746
75.7599
304042053039834661
17.6301
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3659
98.8427
99.8947
68.5558
30405356303503226
81.2500
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9331
96.8097
99.0829
51.7183
30406100231224289257
88.9273
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9331
96.8097
99.0829
51.7183
30406100231224289257
88.9273
hfeng-pmm2SNPtimap_l125_m2_e1*
99.4245
99.4799
99.3693
73.2743
304101593040619323
11.9171
hfeng-pmm2SNP*map_l150_m1_e0*
99.2283
99.3662
99.0908
76.3631
304151943040927934
12.1864
hfeng-pmm3SNPtimap_l125_m2_e1*
99.5907
99.5093
99.6723
71.0190
304191503041510016
16.0000
hfeng-pmm3SNP*map_l150_m1_e0*
99.4475
99.3825
99.5125
74.0748
304201893041414923
15.4362
hfeng-pmm2SNPtimap_l100_m2_e0het
99.3370
99.3436
99.3305
69.0739
304212013041420516
7.8049
gduggal-bwavardINDELD1_5HG002complexvar*
93.5349
92.9971
94.0789
54.5678
3042422912888618181258
69.1969
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
ltrigg-rtg1SNPtimap_l100_m2_e1het
99.0241
98.3236
99.7346
57.0635
3044151930443817
8.6420
hfeng-pmm3SNPtimap_l100_m2_e0het
99.5618
99.4285
99.6954
65.7218
3044717530440939
9.6774