PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
83601-83650 / 86044 show all
rpoplin-dv42SNP*map_l125_m2_e1het
99.1114
98.9777
99.2454
71.6791
2933730329331223129
57.8475
ghariani-varprowlSNP*map_l125_m2_e1het
97.3535
98.9777
95.7818
79.7151
29337303293371292237
18.3437
raldana-dualsentieonSNP*map_l125_m2_e1het
98.7960
98.9845
98.6083
74.0672
29339301293334144
0.9662
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.2987
96.2828
98.3362
70.4045
29347113328902489430
87.9346
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.2987
96.2828
98.3362
70.4045
29347113328902489430
87.9346
gduggal-snapfbSNPtimap_l100_m1_e0het
97.3515
98.0162
96.6958
65.8783
29348594293521003436
43.4696
cchapple-customSNPtimap_l125_m2_e0*
97.1171
96.9958
97.2387
74.5555
2934990929334833230
27.6110
ltrigg-rtg2SNPtimap_l100_m1_e0het
98.9017
98.0395
99.7791
50.4672
2935558729358656
9.2308
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.6104
96.3123
83.7805
65.9807
2935611243041458885443
92.4423
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.6104
96.3123
83.7805
65.9807
2935611243041458885443
92.4423
jlack-gatkSNP*map_l125_m2_e1het
94.5222
99.0756
90.3690
83.8291
29366274293603129222
7.0949
jpowers-varprowlSNPtimap_l125_m2_e0*
97.7706
97.1809
98.3675
76.0737
2940585329405488165
33.8115
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.6456
96.4829
98.8367
71.2472
29408107228971341255
74.7801
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.6456
96.4829
98.8367
71.2472
29408107228971341255
74.7801
gduggal-snapfbSNP*map_l150_m1_e0*
96.2111
96.1025
96.3199
76.8067
294161193294191124527
46.8861
hfeng-pmm2SNP*map_l125_m2_e1het
99.1256
99.2645
98.9871
75.5812
294222182941630125
8.3057
ltrigg-rtg1SNPtimap_l100_m1_e0het
99.0192
98.2900
99.7593
54.6205
2943051229432717
9.8592
gduggal-snapvardSNPtimap_l125_m2_e1*
93.9227
96.2838
91.6745
79.2018
294331136291582648226
8.5347
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.2598
94.5285
96.0025
68.9889
294391704294431226756
61.6639
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.2598
94.5285
96.0025
68.9889
294391704294431226756
61.6639
dgrover-gatkSNP*map_l125_m2_e1het
99.1713
99.3286
99.0144
77.3174
294411992943529356
19.1126
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
86.9712
95.7121
79.6933
69.9711
294421319492601255212425
98.9882
hfeng-pmm3SNP*map_l125_m2_e1het
99.4275
99.3320
99.5233
72.3246
294421982943614113
9.2199
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
anovak-vgINDELD1_5HG002complexvar*
91.1523
90.0107
92.3232
54.8532
2944732682978924771674
67.5818
bgallagher-sentieonSNP*map_l125_m2_e1het
99.0167
99.3893
98.6469
75.8815
294591812945340455
13.6139
gduggal-bwaplatSNPtimap_sirenhomalt
87.4388
77.6954
99.9762
56.7476
2945984572942876
85.7143
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7409
96.6568
98.8496
59.7558
29461101960407703560
79.6586
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7409
96.6568
98.8496
59.7558
29461101960407703560
79.6586
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7091
96.6601
98.7812
70.7632
29462101829015358247
68.9944
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7091
96.6601
98.7812
70.7632
29462101829015358247
68.9944
ndellapenna-hhgaSNPtimap_l100_m1_e0het
99.0953
98.4002
99.8002
62.6312
29463479294655924
40.6780
gduggal-snapvardSNP*map_l150_m1_e0*
92.1558
96.2756
88.3741
81.2786
294691140290913827280
7.3164
gduggal-bwavardSNPtimap_l125_m2_e0*
96.0478
97.4585
94.6773
79.7239
29489769292251643116
7.0603
gduggal-snapplatSNPtimap_l100_m2_e1het
95.5522
95.3521
95.7532
80.1277
295211439295591311671
51.1823
eyeh-varpipeSNP*map_l125_m2_e1het
98.1785
99.6221
96.7760
76.7928
295281122860795328
2.9381
gduggal-snapvardSNPtimap_l100_m2_e0het
93.6224
96.4339
90.9701
78.1195
295301092292762906248
8.5341
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.5891
97.0144
98.1706
67.3997
2957091029515550132
24.0000
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.5891
97.0144
98.1706
67.3997
2957091029515550132
24.0000
jpowers-varprowlSNP*map_l150_m1_e0*
97.1070
96.6121
97.6070
79.3678
29572103729572725231
31.8621
gduggal-snapfbSNPtimap_l125_m2_e1*
96.9811
96.8334
97.1293
73.9180
2960196829605875409
46.7429
cchapple-customSNP*map_l150_m1_e0*
96.5908
96.7363
96.4458
77.1687
29610999296051091240
21.9982
egarrison-hhgaSNPtimap_l100_m1_e0het
99.3929
98.9713
99.8181
63.9434
29634308296355418
33.3333
gduggal-bwafbSNPtimap_l100_m1_e0het
98.8099
98.9880
98.6324
68.7421
296393032964141194
22.8710
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
cchapple-customSNPtimap_l125_m2_e1*
97.1333
97.0166
97.2504
74.6114
2965791229639838230
27.4463