PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83501-83550 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | map_siren | het | 99.3778 | 99.6714 | 99.0859 | 61.4179 | 28515 | 94 | 28510 | 263 | 27 | 10.2662 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | het | 95.4495 | 95.2475 | 95.6523 | 78.8806 | 28519 | 1423 | 28557 | 1298 | 664 | 51.1556 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.8081 | 77.9624 | 81.7434 | 39.7623 | 28528 | 8064 | 48773 | 10893 | 10778 | 98.9443 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | het | 98.5358 | 97.3259 | 99.7762 | 57.8912 | 28534 | 784 | 28535 | 64 | 6 | 9.3750 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | het | 96.1245 | 97.3395 | 94.9395 | 78.6207 | 28538 | 780 | 28573 | 1523 | 346 | 22.7183 | |
| eyeh-varpipe | SNP | tv | map_siren | het | 95.7583 | 99.7903 | 92.0396 | 63.5402 | 28549 | 60 | 28096 | 2430 | 18 | 0.7407 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2336 | 99.4427 | 99.0254 | 72.4471 | 28552 | 160 | 28552 | 281 | 26 | 9.2527 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.2336 | 99.4427 | 99.0254 | 72.4471 | 28552 | 160 | 28552 | 281 | 26 | 9.2527 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0051 | 99.4671 | 98.5473 | 71.4531 | 28559 | 153 | 28559 | 421 | 23 | 5.4632 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0051 | 99.4671 | 98.5473 | 71.4531 | 28559 | 153 | 28559 | 421 | 23 | 5.4632 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5123 | 99.4950 | 99.5296 | 71.9110 | 28567 | 145 | 28561 | 135 | 47 | 34.8148 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.5123 | 99.4950 | 99.5296 | 71.9110 | 28567 | 145 | 28561 | 135 | 47 | 34.8148 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0815 | 99.5612 | 98.6064 | 70.5927 | 28586 | 126 | 28586 | 404 | 25 | 6.1881 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0815 | 99.5612 | 98.6064 | 70.5927 | 28586 | 126 | 28586 | 404 | 25 | 6.1881 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | het | 96.7434 | 96.4676 | 97.0208 | 79.0695 | 28593 | 1047 | 28593 | 878 | 245 | 27.9043 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | * | 95.9902 | 97.4706 | 94.5540 | 78.3647 | 28593 | 742 | 28335 | 1632 | 115 | 7.0466 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | het | 96.4331 | 97.5578 | 95.3341 | 73.4403 | 28602 | 716 | 28605 | 1400 | 602 | 43.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.5454 | 91.9051 | 95.2453 | 77.4805 | 28622 | 2521 | 28425 | 1419 | 235 | 16.5610 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.5454 | 91.9051 | 95.2453 | 77.4805 | 28622 | 2521 | 28425 | 1419 | 235 | 16.5610 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | * | 75.3654 | 60.6881 | 99.4067 | 87.7186 | 28646 | 18556 | 28653 | 171 | 47 | 27.4854 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | het | 98.7273 | 97.7659 | 99.7078 | 62.2269 | 28663 | 655 | 28664 | 84 | 12 | 14.2857 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e0 | het | 94.1644 | 97.8921 | 90.7102 | 83.1354 | 28700 | 618 | 28366 | 2905 | 164 | 5.6454 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | het | 91.4989 | 96.9163 | 86.6551 | 82.4293 | 28726 | 914 | 28383 | 4371 | 310 | 7.0922 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | het | 98.8614 | 98.0285 | 99.7086 | 70.3185 | 28740 | 578 | 28740 | 84 | 36 | 42.8571 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | * | 92.7527 | 90.2330 | 95.4173 | 85.0649 | 28741 | 3111 | 28754 | 1381 | 761 | 55.1050 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | * | 98.9923 | 98.1217 | 99.8786 | 58.7041 | 28784 | 551 | 28785 | 35 | 10 | 28.5714 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.5554 | 89.9881 | 95.2735 | 38.7245 | 28789 | 3203 | 28422 | 1410 | 1207 | 85.6028 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | het | 98.5451 | 97.3516 | 99.7684 | 58.0187 | 28855 | 785 | 28856 | 67 | 6 | 8.9552 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | het | 96.1447 | 97.3583 | 94.9610 | 78.6712 | 28857 | 783 | 28890 | 1533 | 346 | 22.5701 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | het | 93.5196 | 96.3997 | 90.8067 | 76.8858 | 28864 | 1078 | 28615 | 2897 | 247 | 8.5261 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.1713 | 81.5015 | 91.4087 | 79.3482 | 28867 | 6552 | 28940 | 2720 | 211 | 7.7574 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.3965 | 91.9097 | 94.9321 | 59.4498 | 28867 | 2541 | 29709 | 1586 | 1202 | 75.7881 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.3965 | 91.9097 | 94.9321 | 59.4498 | 28867 | 2541 | 29709 | 1586 | 1202 | 75.7881 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | * | 99.1074 | 98.4080 | 99.8167 | 62.4199 | 28868 | 467 | 28869 | 53 | 19 | 35.8491 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | * | 99.1869 | 98.5512 | 99.8308 | 67.6959 | 28910 | 425 | 28910 | 49 | 27 | 55.1020 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | het | 96.4602 | 97.5843 | 95.3616 | 73.5220 | 28924 | 716 | 28927 | 1407 | 602 | 42.7861 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | * | 98.1866 | 98.6569 | 97.7208 | 74.6512 | 28941 | 394 | 28941 | 675 | 158 | 23.4074 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | het | 99.2355 | 98.7312 | 99.7450 | 71.3586 | 28946 | 372 | 28946 | 74 | 28 | 37.8378 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | het | 98.4559 | 98.7380 | 98.1754 | 76.1231 | 28948 | 370 | 28948 | 538 | 123 | 22.8625 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002complexvar | * | 92.5060 | 86.7938 | 99.0230 | 59.4097 | 28957 | 4406 | 28886 | 285 | 203 | 71.2281 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 89.3508 | 81.7668 | 98.4855 | 74.7866 | 28961 | 6458 | 29002 | 446 | 106 | 23.7668 | |
| jli-custom | SNP | * | map_l125_m2_e0 | het | 99.0801 | 98.8232 | 99.3382 | 70.5778 | 28973 | 345 | 28970 | 193 | 54 | 27.9793 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | het | 98.7345 | 97.7868 | 99.7007 | 62.3395 | 28984 | 656 | 28985 | 87 | 12 | 13.7931 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.8130 | 95.1115 | 55.1450 | 68.5922 | 28990 | 1490 | 29105 | 23674 | 22789 | 96.2617 | |