PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
83451-83500 / 86044 show all
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.4491
90.7138
98.5051
60.8883
28251289228401431172
39.9072
ckim-isaacINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3986
91.8696
99.2095
63.6282
28260250128237225152
67.5556
gduggal-snapplatSNPtimap_l125_m2_e1*
94.3667
92.4859
96.3257
81.1411
282722297282871079590
54.6803
ltrigg-rtg1SNPtvmap_sirenhet
99.1688
98.8255
99.5144
50.4058
28273336282781386
4.3478
jpowers-varprowlSNP*map_l125_m2_e0het
96.7249
96.4527
96.9986
79.0213
28278104028278875244
27.8857
ndellapenna-hhgaSNPtvmap_sirenhet
99.3169
98.8465
99.7918
55.1017
28279330282795919
32.2034
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.7965
98.4954
99.0994
71.1241
282804322827925756
21.7899
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7965
98.4954
99.0994
71.1241
282804322827925756
21.7899
eyeh-varpipeSNP*map_l125_m1_e0het
98.1718
99.6126
96.7721
75.4925
282821102740291428
3.0635
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.6510
98.5407
96.7772
70.9827
282934192861895337
3.8825
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.6510
98.5407
96.7772
70.9827
282934192861895337
3.8825
gduggal-snapfbSNPtvmap_sirenhet
97.7974
98.9374
96.6834
63.5849
2830530428306971266
27.3944
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9180
98.7044
99.1325
79.1132
283403722834024829
11.6935
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9180
98.7044
99.1325
79.1132
283403722834024829
11.6935
egarrison-hhgaSNPtvmap_sirenhet
99.4896
99.1331
99.8486
55.6665
28361248283614315
34.8837
gduggal-snapfbSNPtimap_l125_m1_e0*
96.8890
96.7104
97.0682
71.9792
2837096528374857408
47.6079
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.9733
91.1887
83.1303
79.6742
283982744281825719224
3.9168
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.9733
91.1887
83.1303
79.6742
283982744281825719224
3.9168
astatham-gatkINDEL*HG002compoundhet*
95.0088
94.7931
95.2256
62.9264
2840015602828214181407
99.2243
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7774
98.9308
96.6505
72.2034
284053072874099622
2.2088
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7774
98.9308
96.6505
72.2034
284053072874099622
2.2088
gduggal-snapvardSNP*map_l125_m2_e0het
91.4436
96.8927
86.5748
82.3864
28407911280714353308
7.0756
gduggal-bwafbSNPtvmap_sirenhet
98.7335
99.3254
98.1487
63.6405
284161932841653669
12.8731
gduggal-snapplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
65.4034
58.8863
73.5426
80.9801
284251984632333116321955
16.8071
cchapple-customSNPtimap_l125_m1_e0*
97.0755
96.9422
97.2092
72.6876
2843889728423816227
27.8186
hfeng-pmm1SNPtvmap_sirenhet
99.6130
99.4093
99.8175
56.2607
28440169284355214
26.9231
ltrigg-rtg2INDEL*HG002compoundhet*
96.7706
94.9266
98.6878
59.5666
28440152028503379309
81.5303
rpoplin-dv42SNPtvmap_sirenhet
99.4388
99.4093
99.4683
57.2644
284401692843615265
42.7632
ckim-dragenSNPtvmap_sirenhet
98.4766
99.4128
97.5580
65.5354
284411682844471252
7.3034
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
jli-customSNPtvmap_sirenhet
99.4790
99.4407
99.5172
56.5108
284491602844713826
18.8406
ghariani-varprowlSNPtvmap_sirenhet
97.7279
99.4512
96.0633
68.6369
28452157284531166112
9.6055
dgrover-gatkINDEL*HG002compoundhet*
95.1627
94.9733
95.3528
63.3096
2845415062833613811370
99.2035
astatham-gatkSNP*map_l100_m0_e0*
92.7245
86.6569
99.7057
72.7426
284594382284558435
41.6667
raldana-dualsentieonSNPtvmap_sirenhet
99.3697
99.4827
99.2570
59.7589
28461148284562132
0.9390
jlack-gatkSNPtvmap_sirenhet
95.9855
99.5106
92.7015
72.5215
28469140284642241108
4.8193
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4729
99.1955
97.7608
76.5892
284812312872865853
8.0547
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4729
99.1955
97.7608
76.5892
284812312872865853
8.0547
ciseli-customINDELD1_5HG002complexvar*
84.6887
87.0694
82.4348
57.7103
2848342302818260052638
43.9301
jpowers-varprowlSNPtimap_l125_m1_e0*
97.7356
97.1093
98.3701
74.4440
2848784828487472165
34.9576
hfeng-pmm2SNPtvmap_sirenhet
99.5196
99.5806
99.4588
60.5491
284891202848415514
9.0323
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
hfeng-pmm3SNPtvmap_sirenhet
99.6834
99.6155
99.7514
57.1444
2849911028494717
9.8592
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.7785
99.2790
98.2829
78.8740
285052072850549833
6.6265
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7785
99.2790
98.2829
78.8740
285052072850549833
6.6265
dgrover-gatkSNPtvmap_sirenhet
99.5269
99.6400
99.4140
62.9092
285061032850116826
15.4762
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8331
99.2999
96.4089
78.7770
2851120128511106252
4.8964
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8331
99.2999
96.4089
78.7770
2851120128511106252
4.8964