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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
83251-83300 / 86044 show all
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.3271
95.6499
93.0405
79.9739
274631249275532061214
10.3833
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.3271
95.6499
93.0405
79.9739
274631249275532061214
10.3833
gduggal-snapfbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.1402
99.2630
80.8911
72.6164
27474204275796515214
3.2847
hfeng-pmm3SNP*map_l100_m2_e0homalt
99.8546
99.8365
99.8728
63.2901
2747845274783517
48.5714
hfeng-pmm1SNP*map_l100_m2_e0homalt
99.8583
99.8438
99.8728
63.3749
2748043274803517
48.5714
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5328
99.2846
99.7822
62.2610
27480198274916036
60.0000
eyeh-varpipeSNP*map_l100_m2_e0homalt
99.8725
99.8583
99.8868
65.3085
2748439264663016
53.3333
hfeng-pmm2SNP*map_l100_m2_e0homalt
99.8674
99.8728
99.8619
63.3992
2748835274883819
50.0000
jlack-gatkSNP*map_l100_m2_e1homalt
99.3962
98.8991
99.8982
60.9989
27490306274902822
78.5714
gduggal-bwaplatSNP*segdup*
98.6033
97.9585
99.2566
93.9219
274945732750520620
9.7087
ltrigg-rtg1INDEL*HG002compoundhet*
95.1229
91.7957
98.7003
59.4533
27502245827566363303
83.4711
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3676
99.3641
99.3711
65.4796
275021762749217418
10.3448
gduggal-snapvardSNP*map_l125_m1_e0het
91.2586
96.8794
86.2542
81.2481
27506886271834332306
7.0637
gduggal-snapplatSNP*map_l150_m1_e0*
92.5221
89.9049
95.2961
83.9996
275193090275321359751
55.2612
ghariani-varprowlSNP*map_l100_m2_e1homalt
99.3161
99.0071
99.6271
64.4501
275202762752010368
66.0194
ckim-vqsrSNP*segdup*
98.8099
98.0689
99.5622
93.7251
275255422751912112
9.9174
jpowers-varprowlSNP*map_l100_m2_e1homalt
99.3431
99.0286
99.6597
66.2636
27526270275269469
73.4043
gduggal-bwafbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8735
99.4653
98.2886
67.7942
275301482756848097
20.2083
qzeng-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9643
99.4833
98.4507
67.9503
275351432751543339
9.0069
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4910
99.5737
99.4084
59.3516
275601182755916414
8.5366
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5720
99.5845
99.5594
59.6473
275631152756812211
9.0164
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1234
99.6134
96.6774
60.9972
275711072612989885
9.4655
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5829
99.6423
99.5235
65.6204
27579992756913213
9.8485
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5094
99.6893
99.3302
65.3964
27592862758218618
9.6774
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3227
99.7146
98.9339
60.9851
27599792765529824
8.0537
gduggal-bwafbSNP*map_l100_m2_e1homalt
99.5977
99.3200
99.8770
64.6290
27607189276073420
58.8235
astatham-gatkSNP*map_l100_m2_e1homalt
99.6157
99.3200
99.9131
60.3111
27607189276072419
79.1667
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4506
99.7507
99.1523
64.1117
27609692760423618
7.6271
ltrigg-rtg2SNP*map_l125_m1_e0het
98.5086
97.2457
99.8048
55.1586
2761078227610546
11.1111
jpowers-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7595
98.7696
96.7698
62.5065
2761534427711925281
30.3784
cchapple-customSNP*map_l125_m1_e0het
96.0557
97.2739
94.8677
77.0814
27618774276531496342
22.8610
gduggal-snapfbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.6693
98.8054
78.7892
66.3228
27625334279047512326
4.3397
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9413
99.8121
98.0856
65.0500
27626522761653926
4.8238
ckim-dragenSNP*map_l100_m2_e1homalt
99.6376
99.4100
99.8663
58.3837
27632164276373733
89.1892
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.5480
97.7849
99.3232
55.6830
276346262758918894
50.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3761
98.8412
99.9168
52.9178
2763532427634233
13.0435
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8590
99.8446
99.8734
64.1005
2763543276223519
54.2857
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4994
99.8555
99.1459
64.4153
27638402762823820
8.4034
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8358
99.8591
99.8124
64.8592
2763939276735216
30.7692
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5765
99.8591
99.2956
64.7620
27639392762919619
9.6939
ckim-isaacSNP*map_l125_m2_e1*
73.7959
58.5590
99.7510
72.8548
2764119561276436917
24.6377
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2284
98.8877
99.5715
51.9423
276483112765511975
63.0252
rpoplin-dv42SNP*map_l100_m2_e1homalt
99.6343
99.4783
99.7907
63.6404
27651145276525854
93.1034
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4265
98.9020
99.9566
52.6521
2765230727651123
25.0000
asubramanian-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2429
98.9091
99.5790
55.5792
276543052767411713
11.1111
dgrover-gatkSNP*map_l100_m2_e1homalt
99.7116
99.4999
99.9241
60.6444
27657139276572116
76.1905
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3694
98.9198
99.8231
52.8249
2765730227656499
18.3673
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4357
98.9449
99.9314
53.1567
2766429527664197
36.8421
astatham-gatkSNP*segdup*
99.1969
98.5784
99.8232
90.3648
27668399276624912
24.4898
jmaeng-gatkINDEL*HG002compoundhet*
93.6190
92.3632
94.9094
62.9257
2767222882755614781464
99.0528