PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
83051-83100 / 86044 show all
ckim-vqsrINDELD6_15**
98.2389
97.9189
98.5610
55.8987
2554954325548373340
91.1528
ltrigg-rtg2SNP*HG002compoundhet*
99.3639
98.9737
99.7572
37.9767
25557265254736219
30.6452
ckim-gatkSNP*HG002compoundhet*
99.3973
99.0009
99.7970
41.7198
25564258255615238
73.0769
ckim-gatkINDELD6_15**
98.2230
97.9802
98.4670
55.8597
2556552725564398344
86.4322
ckim-vqsrSNP*map_l125_m2_e0*
70.4819
54.7482
98.9056
88.7400
2558021143255772836
2.1201
gduggal-bwafbSNP*HG002compoundhet*
97.9194
99.0744
96.7911
45.9764
2558323925699852222
26.0563
eyeh-varpipeSNP*HG002compoundhet*
97.2195
99.1054
95.4041
44.2893
2559123116939816176
21.5686
astatham-gatkINDELD6_15**
98.2985
98.0875
98.5103
54.9898
2559349925592387347
89.6641
jli-customINDELD6_15**
98.6381
98.1220
99.1595
51.2932
2560249025602217202
93.0876
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
gduggal-snapplatINDELD1_5HG002complexvar*
83.2560
78.3158
88.8615
63.4989
256217094298853746907
24.2125
gduggal-snapplatSNP*map_l100_m2_e1homalt
95.9332
92.2507
99.9220
63.8706
256422154256252015
75.0000
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.6764
39.2603
64.0343
80.0683
256573969430253169924936
29.0490
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.6764
39.2603
64.0343
80.0683
256573969430253169924936
29.0490
anovak-vgSNP*map_l125_m1_e0het
77.1793
90.4691
67.2939
76.7918
25686270625425123572688
21.7529
astatham-gatkSNPtimap_l125_m2_e1*
91.2494
84.0525
99.7941
76.0425
256944875256905329
54.7170
rpoplin-dv42SNP*HG002compoundhet*
99.6493
99.5895
99.7091
40.7188
25716106257077561
81.3333
jlack-gatkSNP*HG002compoundhet*
99.5417
99.7018
99.3822
42.1778
25745772573816046
28.7500
jli-customSNP*HG002compoundhet*
99.7328
99.7599
99.7058
41.1267
2576062257577636
47.3684
ckim-dragenSNP*HG002compoundhet*
99.7929
99.7831
99.8027
41.5217
2576656258045126
50.9804
bgallagher-sentieonSNP*HG002compoundhet*
99.8063
99.8025
99.8102
41.0420
2577151257644925
51.0204
dgrover-gatkSNP*HG002compoundhet*
99.8063
99.8102
99.8025
41.2435
2577349257665136
70.5882
eyeh-varpipeINDEL*HG002complexvarhomalt
93.9842
95.4231
92.5880
51.8445
2579012372607020872039
97.7000
astatham-gatkSNP*map_l150_m1_e0*
91.4460
84.4686
99.6799
78.7872
258554754258498339
46.9880
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1945
93.5761
98.9636
58.8872
25900177826068273187
68.4982
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.2166
90.2898
98.5006
65.6575
2592427882614639831
7.7889
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.2166
90.2898
98.5006
65.6575
2592427882614639831
7.7889
ckim-vqsrSNP*map_l125_m2_e1*
70.6297
54.9235
98.9163
88.7326
2592521277259222846
2.1127
asubramanian-gatkSNPtvmap_siren*
72.2865
56.6449
99.8618
75.5276
2601719913260113612
33.3333
gduggal-snapvardSNP*map_l100_m1_e0homalt
98.0408
96.3523
99.7895
60.4906
26018985256055441
75.9259
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.9743
92.1019
91.8470
57.2556
2602822322742024341757
72.1857
mlin-fermikitINDEL*HG002complexvarhomalt
95.7600
96.3222
95.2043
55.1307
260339942592713061267
97.0138
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
mlin-fermikitSNP*map_l100_m2_e0het
71.6803
56.3051
98.6068
57.9033
26125202742611736911
2.9810
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
82.8791
91.0940
76.0233
83.7724
261542557258548154268
3.2867
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.8791
91.0940
76.0233
83.7724
261542557258548154268
3.2867
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.5338
92.8273
90.2759
58.4295
2623320272618028201567
55.5674
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.1102
86.0761
92.3660
60.6253
2623642443315227402400
87.5912
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.1102
86.0761
92.3660
60.6253
2623642443315227402400
87.5912
gduggal-snapfbSNP*map_l100_m1_e0homalt
98.4097
97.1633
99.6885
68.9633
26237766262398229
35.3659
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
ckim-isaacSNP*map_l125_m1_e0*
73.2800
57.9125
99.7492
70.8000
2625019077262526616
24.2424
anovak-vgSNP*map_l150_m1_e0*
79.3251
85.8375
73.7311
78.7422
2627443352597492542118
22.8874
gduggal-bwavardSNP*map_l100_m1_e0homalt
98.6152
97.3744
99.8881
60.4751
26294709258782923
79.3103
anovak-vgSNPtimap_l125_m2_e0*
81.4788
86.9291
76.6717
75.9478
2630339552608679371770
22.3006
jmaeng-gatkSNPtimap_l100_m1_e0het
92.5822
87.8732
97.8244
80.8303
2631136312630458555
9.4017
cchapple-customSNP*map_l100_m1_e0homalt
98.7154
97.4707
99.9924
55.8509
263206832631022
100.0000
gduggal-bwafbINDEL*HG002complexvarhomalt
97.6327
97.4544
97.8116
53.5251
2633968826326589564
95.7555