PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
82851-82900 / 86044 show all
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.3105
97.4328
99.2041
31.5728
2391063024805199188
94.4724
jmaeng-gatkSNP*map_l125_m2_e0het
88.4835
81.5574
96.6953
87.4762
2391154072390581751
6.2424
jpowers-varprowlSNPtvmap_l100_m1_e0*
97.6764
97.6246
97.7283
72.0238
2391958223919556138
24.8201
ckim-gatkSNP*map_l125_m2_e0het
88.5829
81.5915
96.8846
87.2138
2392153972391576955
7.1522
ltrigg-rtg2INDEL**hetalt
97.1063
94.8330
99.4912
68.4092
23933130424639126124
98.4127
gduggal-snapplatINDELI1_5HG002complexvar*
77.0714
71.7352
83.2654
65.6966
239339430243014884375
7.6781
gduggal-bwafbINDELD6_15**
94.1659
91.7408
96.7228
49.8237
23937215525057849794
93.5218
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.1412
97.5428
98.7469
41.4519
2393760323956304264
86.8421
ckim-isaacINDEL*HG002complexvarhomalt
93.1685
88.5818
98.2561
47.1228
23941308623890424132
31.1321
bgallagher-sentieonINDELI6_15**
97.2604
96.4589
98.0753
52.5522
2394487923949470434
92.3404
ckim-dragenINDELI6_15**
97.2249
96.4630
97.9990
52.8733
2394587823949489448
91.6155
gduggal-bwavardSNPtvmap_l100_m1_e0*
95.8710
97.8083
94.0091
75.1618
2396453723883152297
6.3732
jmaeng-gatkINDELI6_15**
97.3971
96.5435
98.2659
53.3907
2396585823970423364
86.0520
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
66.4735
78.6403
57.5670
62.2369
239686510513443784629268
77.3345
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.4735
78.6403
57.5670
62.2369
239686510513443784629268
77.3345
cchapple-customSNPtvmap_l100_m1_e0*
97.1628
97.8613
96.4743
69.7586
2397752423970876133
15.1826
ghariani-varprowlSNP*HG002compoundhet*
85.5640
92.8588
79.3318
55.0838
2397818442422063102033
32.2187
gduggal-snapfbSNPtvmap_l100_m1_e0*
97.5300
97.9838
97.0805
69.8683
2400749424008722232
32.1330
ckim-vqsrINDELI6_15**
97.6524
96.7691
98.5520
52.9508
2402180224026353331
93.7677
hfeng-pmm3INDELI6_15**
97.8954
96.7812
99.0356
49.5509
2402479924029234222
94.8718
hfeng-pmm1INDELI6_15**
97.8503
96.8134
98.9096
50.1395
2403279124037265246
92.8302
cchapple-customINDELI6_15**
97.7435
96.8215
98.6833
49.3635
2403478925632342305
89.1813
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.4981
97.9421
99.0604
41.3577
2403550524037228220
96.4912
ckim-gatkINDELI6_15**
97.6383
96.8416
98.4482
52.9059
2403978424044379335
88.3905
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7692
97.9625
99.5893
34.5018
24040500240059966
66.6667
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2676
97.9992
98.5375
41.6126
2404949124053357339
94.9580
ckim-vqsrSNPtimap_sirenhomalt
77.6182
63.4297
99.9834
60.5065
24050138662404444
100.0000
hfeng-pmm2INDELI6_15**
97.8481
96.8980
98.8171
51.0141
2405377024058288265
92.0139
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.4677
98.0807
98.8578
41.0102
2406947124060278268
96.4029
jli-customINDELI6_15**
97.9633
96.9786
98.9683
47.9648
2407375024077251222
88.4462
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.6077
98.1214
99.0988
41.2220
2407946124081219210
95.8904
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.8514
55.5879
58.1738
61.2449
2408919246243941753913551
77.2621
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5115
98.1663
98.8593
41.0712
2409045024092278270
97.1223
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.6306
98.1744
99.0911
41.2071
2409244824094221211
95.4751
qzeng-customINDELD6_15**
90.6408
92.3501
88.9936
51.4321
2409619962541331431242
39.5164
astatham-gatkINDELI6_15**
97.8089
97.1035
98.5247
52.8353
2410471924109361337
93.3518
ciseli-customSNPtimap_l100_m2_e0het
83.2254
78.7865
88.1944
75.0570
24126649624100322686
2.6658
ltrigg-rtg2INDELI6_15**
98.2993
97.1961
99.4278
44.2481
241276962380413783
60.5839
gduggal-bwaplatSNPtimap_l100_m2_e1het
87.2661
77.9360
99.1339
83.6711
2412968312415121163
29.8578
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
dgrover-gatkINDELI6_15**
97.9082
97.2888
98.5355
53.2809
2415067324155359329
91.6435
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
84.7824
84.1112
85.4645
89.6399
241504562242424123282
6.8397
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
84.7824
84.1112
85.4645
89.6399
241504562242424123282
6.8397
gduggal-bwaplatSNPtvmap_sirenhet
91.2244
84.4245
99.2157
78.7828
2415344562416119146
24.0838
ltrigg-rtg2SNPtvmap_l100_m1_e0*
99.1748
98.6001
99.7563
54.0248
2415834324152595
8.4746
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7654
98.4474
99.0855
41.1980
2415938124161223213
95.5157
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.9784
98.5004
99.4611
39.0941
2417236824179131123
93.8931
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.8065
98.5086
99.1063
41.3831
2417436624176218209
95.8716
gduggal-snapplatSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
90.1322
86.5088
94.0725
74.1670
241873772242501528165
10.7984