PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
82501-82550 / 86044 show all
raldana-dualsentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9307
99.9604
55.9950
20185142018588
100.0000
gduggal-bwafbINDELI6_15**
87.8626
81.3399
95.5225
40.4474
20191463221206994970
97.5855
hfeng-pmm2SNP*map_l150_m2_e1het
98.9487
99.1652
98.7332
79.6403
201931702018725923
8.8803
ghariani-varprowlSNPtimap_l150_m2_e0*
97.8795
98.4497
97.3158
80.1688
2019431820194557133
23.8779
dgrover-gatkSNP*map_l150_m2_e1het
98.9757
99.1897
98.7625
81.1801
201981652019225350
19.7628
hfeng-pmm3SNP*map_l150_m2_e1het
99.2946
99.2143
99.3751
76.6790
202031602019712713
10.2362
ckim-gatkSNPtvmap_l100_m2_e0*
88.3659
80.7254
97.6039
81.5961
2020848252020449617
3.4274
bgallagher-sentieonSNP*map_l150_m2_e1het
98.8048
99.2830
98.3312
79.8100
202171462021134350
14.5773
gduggal-bwavardSNPtimap_l150_m2_e1*
95.4042
97.5776
93.3256
83.0965
2022150220037143394
6.5597
jmaeng-gatkSNP*map_l100_m2_e1homalt
84.2134
72.7551
99.9555
67.5514
2022375732022398
88.8889
jmaeng-gatkSNPtvmap_l100_m2_e0*
88.3689
80.8253
97.4657
81.7790
2023348002022952616
3.0418
ckim-vqsrSNP*map_l125_m2_e0het
81.2064
69.0122
98.6348
89.1411
202339085202302804
1.4286
gduggal-bwafbSNPtimap_l150_m2_e0*
98.7457
98.6398
98.8519
77.9268
202332792023323569
29.3617
jlack-gatkSNPtimap_l150_m2_e0*
96.1925
98.6739
93.8329
83.2384
20240272202361330126
9.4737
ltrigg-rtg2SNPtimap_l150_m2_e1*
98.7779
97.6982
99.8816
65.7932
2024647720250247
29.1667
ndellapenna-hhgaINDELD1_5HG002complexvarhet
97.7232
97.5199
97.9274
51.5698
2025051520317430365
84.8837
eyeh-varpipeINDELD1_5HG002complexvarhet
98.4401
97.6258
99.2681
46.7116
202724931885313998
70.5036
eyeh-varpipeSNP*map_l150_m2_e1het
97.8792
99.5826
96.2332
80.4169
20278851964676922
2.8609
jli-customSNPtimap_l150_m2_e0*
99.2101
98.8933
99.5289
73.1343
20285227202839636
37.5000
ckim-dragenSNPtimap_l150_m2_e0*
98.2329
98.8933
97.5811
78.1929
202852272029250367
13.3201
gduggal-bwafbINDEL*HG002compoundhethetalt
88.3144
80.5679
97.7090
73.4740
2028748936696157155
98.7261
rpoplin-dv42SNPtimap_l150_m2_e0*
99.1376
98.9177
99.3584
75.0879
202902222028613193
70.9924
gduggal-snapplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
75.2906
65.9666
87.6843
78.0956
20292104692325332661977
60.5328
qzeng-customSNPtvmap_l100_m2_e1*
88.3100
80.2832
98.1201
78.5916
20298498520251388306
78.8660
egarrison-hhgaSNPtimap_l150_m2_e0*
99.3881
98.9811
99.7985
75.2011
20303209203034120
48.7805
raldana-dualsentieonSNPtimap_l150_m2_e0*
98.9377
98.9908
98.8846
75.4120
20305207203012299
3.9301
gduggal-bwafbINDEL**hetalt
87.6150
80.5643
96.0183
78.7583
2033249056728279275
98.5663
hfeng-pmm1SNPtimap_l150_m2_e0*
99.3647
99.1322
99.5983
75.0541
20334178203308223
28.0488
ltrigg-rtg1SNPtimap_l150_m2_e1*
98.9537
98.1229
99.7988
69.2768
20334389203384116
39.0244
hfeng-pmm1INDELD1_5HG002complexvarhet
98.9178
97.9388
99.9165
54.1519
2033742820340179
52.9412
hfeng-pmm2INDELD1_5HG002complexvarhet
98.9180
97.9581
99.8969
54.5187
20341424203462114
66.6667
dgrover-gatkSNPtimap_l150_m2_e0*
99.2366
99.1907
99.2825
78.2548
203461662034214736
24.4898
raldana-dualsentieonINDELD1_5HG002complexvarhet
98.9112
97.9918
99.8479
54.6492
20348417203513119
61.2903
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50*
57.8545
55.6351
60.2584
48.5091
2035816234203331341013207
98.4862
hfeng-pmm3INDELD1_5HG002complexvarhet
98.9670
98.0448
99.9068
54.1875
20359406203631911
57.8947
jpowers-varprowlSNP*map_l100_m0_e0het
96.3156
96.0340
96.5990
77.1422
2036484120365717214
29.8466
egarrison-hhgaINDELD1_5HG002complexvarhet
97.8863
98.0978
97.6758
52.4481
2037039520424486392
80.6584
bgallagher-sentieonSNPtimap_l150_m2_e0*
99.1869
99.3321
99.0422
77.0287
203751372037119737
18.7817
gduggal-bwaplatINDELD6_15**
86.9684
78.1121
98.0899
65.2244
20381571120387397273
68.7657
ndellapenna-hhgaSNPtimap_l150_m2_e1*
99.0741
98.3690
99.7895
74.1500
20385338203854323
53.4884
hfeng-pmm2SNPtimap_l150_m2_e0*
99.3133
99.4247
99.2021
77.6100
203941182039016420
12.1951
hfeng-pmm3SNPtimap_l150_m2_e0*
99.5024
99.4394
99.5655
75.5202
20397115203938914
15.7303
ghariani-varprowlSNPtimap_l150_m2_e1*
97.8866
98.4558
97.3240
80.2448
2040332020403561134
23.8859
qzeng-customINDELD1_5HG002complexvarhet
98.6823
98.3530
99.0138
55.4973
2042334221686216103
47.6852
eyeh-varpipeSNPtimap_l150_m2_e0*
99.1763
99.6246
98.7319
78.7456
20435772008825816
6.2016
gduggal-bwavardINDELD1_5HG002complexvarhet
94.9162
98.4397
91.6362
58.2975
204413241954617841236
69.2825
gduggal-bwafbSNPtimap_l150_m2_e1*
98.7513
98.6488
98.8540
78.0171
204432802044323770
29.5359
gduggal-snapvardSNP*map_l100_m0_e0het
90.2047
96.4159
84.7453
80.5659
20445760202163639248
6.8151
ckim-gatkSNPtvmap_l100_m2_e1*
88.4609
80.8686
97.6264
81.5863
2044648372044249717
3.4205
jlack-gatkSNPtimap_l150_m2_e1*
96.1985
98.6826
93.8363
83.3002
20450273204461343127
9.4564