PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
82351-82400 / 86044 show all
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.6420
98.4090
98.8761
66.2789
195463162023523048
20.8696
dgrover-gatkSNPtimap_l150_m1_e0*
99.2284
99.1782
99.2787
76.9359
195501621954614235
24.6479
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8957
98.4694
99.3257
54.3646
195583041959213345
33.8346
qzeng-customSNPtvmap_l100_m1_e0*
88.0506
79.8294
98.1596
77.4096
19559494219521366304
83.0601
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.0655
98.4745
99.6636
56.9081
19559303195526647
71.2121
ltrigg-rtg1SNP*map_l150_m2_e0het
98.4430
97.1937
99.7248
66.0349
1956856519569549
16.6667
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.9964
98.5399
99.4571
53.2701
1957229021802119100
84.0336
bgallagher-sentieonSNPtimap_l150_m1_e0*
99.1792
99.3202
99.0387
75.5864
195781341957419036
18.9474
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2893
95.0573
97.5536
44.7868
19578101819579491468
95.3157
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.1492
98.5802
99.7249
57.4159
19580282195735432
59.2593
gduggal-snapplatSNP*map_l100_m0_e0het
93.0063
92.3697
93.6518
83.5542
195871618196061329738
55.5305
ckim-isaacINDELI6_15**
86.2978
78.9268
95.1875
41.9911
19592523119601991727
73.3602
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2201
98.6457
99.8013
56.9126
19593269195863921
53.8462
hfeng-pmm2SNPtimap_l150_m1_e0*
99.2981
99.4065
99.1899
76.2408
195951171959116020
12.5000
hfeng-pmm3SNPtimap_l150_m1_e0*
99.4898
99.4217
99.5579
74.0428
19598114195948714
16.0920
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8948
98.6708
99.1198
73.7421
1959826419594174146
83.9080
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2054
98.6910
99.7252
56.8874
19602260195985435
64.8148
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2458
98.7161
99.7811
57.1497
19607255196004325
58.1395
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.1711
98.8017
99.5433
59.8357
19624238196179058
64.4444
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4336
95.2855
99.6808
39.8879
19625971196736352
82.5397
gduggal-bwaplatSNP*map_l125_m2_e0het
79.9285
66.9418
99.1669
89.4354
1962696921964016544
26.6667
eyeh-varpipeSNPtimap_l150_m1_e0*
99.1809
99.6144
98.7511
77.4196
19636761929324416
6.5574
gduggal-snapfbINDELD1_5HG002complexvarhet
94.7486
94.6159
94.8816
54.6441
196471118206321113329
29.5597
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.3204
98.9679
99.6754
59.9358
19657205196506445
70.3125
jlack-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.0126
98.9729
99.0524
59.2954
196582041965118896
51.0638
mlin-fermikitSNPtvmap_sirenhet
80.8694
68.7161
98.2452
51.7745
196598950196513513
0.8547
ltrigg-rtg2SNP*map_l150_m2_e1het
98.1705
96.5771
99.8173
61.6528
1966669719666362
5.5556
gduggal-bwavardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.6054
97.3613
99.8818
50.3445
19666533194362317
73.9130
ndellapenna-hhgaSNP*map_l150_m2_e0het
98.6606
97.6854
99.6554
74.6307
19667466196676830
44.1176
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.3059
99.0585
99.5546
59.8847
19675187196688846
52.2727
gduggal-snapfbINDELD6_15**
82.6720
75.4063
91.4873
42.8991
1967564172044119021873
98.4753
ckim-gatkSNPtvmap_l100_m1_e0*
88.1419
80.3355
97.6286
80.4620
1968348181967947817
3.5565
gduggal-snapfbSNPtimap_l150_m2_e0*
96.3262
95.9877
96.6670
77.7511
1968982319693679349
51.3991
jmaeng-gatkSNPtvmap_l100_m1_e0*
88.1452
80.4375
97.4866
80.6623
1970847931970450816
3.1496
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1585
95.7079
98.6538
44.4898
1971288419713269264
98.1413
gduggal-snapvardSNP*map_l150_m2_e1het
89.6801
96.8079
83.5299
85.0251
19713650194753840262
6.8229
gduggal-snapvardSNPtimap_l150_m2_e0*
92.6480
96.1047
89.4313
82.4164
19713799195302308189
8.1889
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6143
95.7565
99.5458
41.0573
19722874197239082
91.1111
gduggal-bwavardSNP*map_l150_m2_e0het
93.0021
97.9685
88.5150
85.7521
19724409194912529126
4.9822
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.4504
99.3304
99.5707
59.9377
19729133197138564
75.2941
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.4660
99.4311
99.5010
59.2336
19749113197429960
60.6061
cchapple-customSNP*map_l150_m2_e1het
95.7763
96.9945
94.5883
81.9692
19751612197681131246
21.7507
gduggal-snapfbSNP*map_l150_m2_e1het
95.8511
96.9945
94.7343
76.7883
19751612197541098511
46.5392
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.5288
99.4462
99.6115
59.5139
19752110197457749
63.6364
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.5315
99.4915
99.5716
59.7014
19761101197548547
55.2941
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7194
96.0089
99.4918
41.3653
197748221977510187
86.1386
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6832
96.0089
99.4168
42.4933
1977482219775116110
94.8276
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4367
96.0623
98.8510
34.0969
1978581120562239223
93.3054
anovak-vgSNP*HG002compoundhet*
78.0620
76.6207
79.5586
43.6697
1978560372029752153696
70.8725
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.4699
97.9603
96.9843
55.7493
1978741220132626469
74.9201