PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
82301-82350 / 86044 show all
ltrigg-rtg2SNP*map_l150_m2_e0het
98.1544
96.5480
99.8151
61.4966
1943869519439362
5.5556
ckim-vqsrSNP*map_l125_m1_e0het
80.8165
68.4629
98.6098
88.4760
194388954194352743
1.0949
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.3999
51.2849
57.9178
44.7526
1943818464330232399420921
87.1926
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
gduggal-bwafbSNPtisegdup*
99.0195
99.5086
98.5352
91.2837
19441961944128916
5.5363
gduggal-snapfbSNPtisegdup*
99.1459
99.5137
98.7809
90.9477
19442951944624023
9.5833
jlack-gatkSNPtimap_l150_m1_e0*
96.1043
98.6353
93.7000
82.0564
19443269194391307125
9.5639
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.2940
99.3207
97.2884
75.8975
194461331944654230
5.5351
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.2940
99.3207
97.2884
75.8975
194461331944654230
5.5351
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
93.2309
99.3718
87.8049
80.7052
1945612318720260087
3.3462
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
93.2309
99.3718
87.8049
80.7052
1945612318720260087
3.3462
ndellapenna-hhgaSNPtisegdup*
99.5651
99.6059
99.5244
88.6856
1946077194609333
35.4839
ltrigg-rtg1SNPtisegdup*
99.1266
99.6417
98.6169
87.5468
19467701946527331
11.3553
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
ghariani-varprowlSNPtisegdup*
98.2251
99.6929
96.7998
91.5895
19477601948064438
5.9006
ltrigg-rtg2SNPtisegdup*
99.2028
99.6980
98.7126
86.7471
19478591947525432
12.5984
egarrison-hhgaSNPtisegdup*
99.6343
99.7134
99.5554
88.9440
1948156194818725
28.7356
jmaeng-gatkSNP*map_l100_m1_e0homalt
83.8037
72.1438
99.9590
65.3578
1948175221948188
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
gduggal-snapvardSNP*map_l150_m2_e0het
89.6113
96.7913
83.4229
84.9670
19487646192543826259
6.7695
jli-customSNPtimap_l150_m1_e0*
99.2008
98.8636
99.5403
71.1664
19488224194869035
38.8889
ckim-dragenSNPtimap_l150_m1_e0*
98.2015
98.8636
97.5482
76.3868
194882241949549066
13.4694
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8166
98.1371
99.5056
55.0392
19492370195239732
32.9897
rpoplin-dv42SNPtimap_l150_m1_e0*
99.1152
98.8890
99.3424
73.3921
194932191948912991
70.5426
rpoplin-dv42SNPtisegdup*
99.7773
99.7799
99.7748
89.3733
1949443194924419
43.1818
hfeng-pmm1SNPtisegdup*
99.7442
99.8004
99.6881
88.7407
194983919496615
8.1967
raldana-dualsentieonSNPtisegdup*
99.6041
99.8055
99.4035
89.2386
1949938194971174
3.4188
jlack-gatkSNPtisegdup*
98.4574
99.8106
97.1403
92.8551
19500371949857410
1.7422
ckim-dragenSNPtisegdup*
98.5623
99.8106
97.3449
91.6401
1950037195055329
1.6917
hfeng-pmm2SNPtisegdup*
99.6754
99.8157
99.5355
89.6871
195013619499919
9.8901
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2014
99.6118
98.7944
67.9415
19503761950323815
6.3025
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2014
99.6118
98.7944
67.9415
19503761950323815
6.3025
hfeng-pmm3SNPtisegdup*
99.7137
99.8311
99.5965
88.9183
195043319502793
3.7975
cchapple-customSNPtisegdup*
99.6040
99.8311
99.3779
91.2552
19504331949012216
13.1148
egarrison-hhgaSNPtimap_l150_m1_e0*
99.3657
98.9448
99.7902
73.6441
19504208195044120
48.7805
dgrover-gatkSNPtisegdup*
99.6780
99.8413
99.5153
89.9275
195063119504956
6.3158
raldana-dualsentieonSNPtimap_l150_m1_e0*
98.9223
98.9600
98.8846
73.7335
19507205195032208
3.6364
bgallagher-sentieonSNPtisegdup*
99.5103
99.8567
99.1663
89.5899
1950928195071646
3.6585
jli-customSNPtisegdup*
99.6094
99.8669
99.3533
88.6519
1951126195111276
4.7244
eyeh-varpipeSNPtisegdup*
98.6842
99.8874
97.5096
89.9888
19515221922549113
2.6477
gduggal-snapfbSNP*map_l150_m2_e0het
95.8306
96.9701
94.7174
76.6962
19523610195261089509
46.7401
cchapple-customSNP*map_l150_m2_e0het
95.7599
96.9701
94.5794
81.9061
19523610195421120245
21.8750
jpowers-varprowlSNP*map_l150_m2_e1het
96.2073
95.9191
96.4972
82.5948
1953283119532709207
29.1961
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0062
96.7177
99.3296
54.4844
195366631926113058
44.6154
hfeng-pmm1SNPtimap_l150_m1_e0*
99.3490
99.1071
99.5921
73.5929
19536176195328023
28.7500