PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
82001-82050 / 86044 show all
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3427
99.6095
99.0772
37.9144
1811271181451693
1.7752
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
qzeng-customSNP*func_cds*
99.7598
99.8182
99.7016
28.7413
181173318040544
7.4074
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3937
99.6425
99.1462
42.0410
1811865181151562
1.2821
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.3553
99.7468
97.0021
67.1820
181204618120560541
96.6071
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.3553
99.7468
97.0021
67.1820
181204618120560541
96.6071
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
ghariani-varprowlSNP*func_cds*
99.5441
99.8512
99.2389
30.8362
18123271812313914
10.0719
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
jmaeng-gatkSNP*func_cds*
99.4513
99.8678
99.0382
31.9360
1812624181231761
0.5682
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
bgallagher-sentieonINDELI1_5HG002complexvarhet
99.7743
99.6591
99.8897
57.8575
1812762181082010
50.0000
dgrover-gatkINDELI1_5HG002complexvarhet
99.7798
99.6646
99.8952
58.2404
181286118108199
47.3684
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.2628
41.8345
62.9440
73.1508
181292520621603127184309
33.8811
hfeng-pmm2SNPtimap_l125_m1_e0het
99.1603
99.2500
99.0708
74.2780
181291371812517014
8.2353
anovak-vgSNP*map_l150_m2_e0het
75.9821
90.0512
65.7151
81.6508
1813020031793393562121
22.6699
ltrigg-rtg1SNP*func_cds*
99.6647
99.8898
99.4405
22.8252
1813020181291021
0.9804
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2011
99.7140
98.6934
41.6778
1813152181282403
1.2500
ckim-gatkINDELI1_5HG002complexvarhet
99.7716
99.6866
99.8566
58.0913
1813257181102613
50.0000
cchapple-customSNP*func_cds*
99.7855
99.9174
99.6539
26.7611
181351518142631
1.5873
dgrover-gatkSNPtimap_l125_m1_e0het
99.2150
99.2992
99.1308
75.9575
181381281813415933
20.7547
ghariani-varprowlSNPtimap_l100_m2_e0homalt
99.4217
99.0660
99.7800
63.1898
18138171181384028
70.0000
jpowers-varprowlSNPtimap_l100_m2_e0homalt
99.4381
99.0770
99.8019
64.9829
18140169181403628
77.7778
rpoplin-dv42SNP*func_cds*
99.9366
99.9449
99.9284
24.7263
181401018137133
23.0769
gduggal-bwafbSNP*func_cds*
99.6211
99.9504
99.2939
30.1552
181419181411292
1.5504
jli-customSNP*func_cds*
99.9036
99.9559
99.8514
23.3699
18142818142270
0.0000
hfeng-pmm3SNPtimap_l125_m1_e0het
99.4436
99.3211
99.5663
71.0299
1814212418138798
10.1266
jlack-gatkSNP*func_cds*
99.3020
99.9614
98.6513
31.6355
181437181402481
0.4032
hfeng-pmm1SNP*func_cds*
99.9366
99.9614
99.9119
23.2953
18143718140160
0.0000
raldana-dualsentieonSNP*func_cds*
99.8926
99.9614
99.8239
23.4025
18143718140320
0.0000
gduggal-snapfbSNP*func_cds*
99.6978
99.9614
99.4355
28.3431
181437181431032
1.9418
dgrover-gatkSNP*func_cds*
99.9284
99.9614
99.8954
24.8199
18143718140190
0.0000
ndellapenna-hhgaSNP*func_cds*
99.9367
99.9614
99.9119
23.5700
18143718143160
0.0000
ckim-dragenSNP*func_cds*
99.5474
99.9669
99.1313
30.5099
181446181441591
0.6289
eyeh-varpipeSNP*func_cds*
98.2084
99.9669
96.5106
26.4105
181446179506491
0.1541
hfeng-pmm3SNP*func_cds*
99.9367
99.9669
99.9064
23.5356
18144618141170
0.0000
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
egarrison-hhgaSNP*func_cds*
99.9477
99.9725
99.9229
23.9159
18145518145140
0.0000
bgallagher-sentieonSNPtimap_l125_m1_e0het
99.0798
99.3430
98.8180
74.4018
181461201814221733
15.2074
hfeng-pmm2SNP*func_cds*
99.9174
99.9780
99.8569
24.2548
18146418143260
0.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0953
99.8075
98.3931
40.1515
18148351818629710
3.3670
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.2808
99.8350
96.7742
42.6049
1815330181506058
1.3223
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.7859
99.8680
99.7039
39.7224
181592418186546
11.1111
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.8707
99.8790
99.8625
38.9762
181612218154258
32.0000